MmuEX7007145 @ mm10
Exon Skipping
Gene
ENSMUSG00000001027 | Scn4a
Description
sodium channel, voltage-gated, type IV, alpha [Source:MGI Symbol;Acc:MGI:98250]
Coordinates
chr11:106348703-106349389:-
Coord C1 exon
chr11:106349117-106349389
Coord A exon
chr11:106348900-106349018
Coord C2 exon
chr11:106348703-106348792
Length
119 bp
Sequences
Splice sites
3' ss Seq
CGTTTCTCTCCCTGCCTCAGACC
3' ss Score
9.07
5' ss Seq
CGCATATCC
5' ss Score
-11.86
Exon sequences
Seq C1 exon
ATGGCCAGCTCATCTCTGCCCACCCTGGTCCCCCCTGGTCCCCACTGCCTGCGCCCCTTCACCCCAGAGTCCCTGGCAGCCATAGAACAGCGGGCAATGGAGGAGGAAGCCCGGCTGCAGCGGAACAAGCAAATGGAGATTGAAGAGCCTGAGCGGAAGCCACGCAGTGACCTGGAAGCTGGCAAGAACCTCCCACTCATCTATGGGGACCCCCCACCTGAAGTCATTGGCGTCCCCCTGGAGGACCTGGACCCTTACTACAGTGACAAGAAG
Seq A exon
ACCTTCATTGTGCTCAACAAAGGAAAGGCCATCTTCCGATTCTCTGCCACCCCTGCCCTCTACATGCTGAGCCCCTTCAGCATCGTCCGGCGGGTGGCTATCAAGGTGCTCATCCACGC
Seq C2 exon
GCTGTTCAGCATGTTCATCATGATCACCATCTTGACCAACTGCGTGTTCATGACCATGAGCAACCCGCCTTCTTGGTCCAAGGACGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001027-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.396 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.4=3.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCGGAACAAGCAAATG
R:
CACGTCCTTGGACCAAGAAGG
Band lengths:
247-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types