RnoEX6050150 @ rn6
Exon Skipping
Gene
ENSRNOG00000012134 | Scn4a
Description
sodium voltage-gated channel alpha subunit 4 [Source:RGD Symbol;Acc:3636]
Coordinates
chr10:94540517-94541978:-
Coord C1 exon
chr10:94541307-94541978
Coord A exon
chr10:94540714-94540832
Coord C2 exon
chr10:94540517-94540606
Length
119 bp
Sequences
Splice sites
3' ss Seq
AGTTTCTCTCCCTGCCTCAGACC
3' ss Score
7.51
5' ss Seq
CGCATATCC
5' ss Score
-11.86
Exon sequences
Seq C1 exon
CACCGTGCCCAGTGTCCTGGGCATCAGCACGCCCAGGTCTTGCAGGCACATCTCCCAGCCCCAACAAGACCAGGACACCCACCTCCCTGACCCAACTCCTGGGCAGGCAGAGAGTGAGGAGTACACAGTAGACCCCGGGCATTGGTGACCACCCAAAACCCAAGGGCTGCGGGCTGTAGCGGCTCTGTTACCTACCACCCTCTGGCCCCTGAGCCCAGAATGCAAGGATGGCCAGCTCATCTCTGCCCAACCTGGTCCCCCCGGGTCCCCACTGCCTGCGCCCCTTCACCCCAGAGTCCCTGGCAGCCATAGAGCAGCGGGCGGTGGAGGAGGAGGCCCGGCTGCAGCGGAACAAGCAGATGGAGATTGAGGAGCCTGAGCGGAAGCCACGCAGTGACCTGGAAGCTGGCAAGAACCTCCCACTCATCTATGGGGACCCCCCACCCGAAGTCATTGGCATCCCCCTGGAGGACCTGGATCCTTACTACAGTGACAAGAAG
Seq A exon
ACCTTCATTGTGCTCAACAAAGGAAAGGCCATCTTCCGATTCTCTGCCACGCCTGCCCTCTACCTGCTGAGCCCCTTCAGCATCGTCAGGAGGGTGGCTATCAAGGTGCTCATTCACGC
Seq C2 exon
GCTGTTCAGCATGTTTATCATGATCACCATCCTGACCAACTGTGTGTTCATGACCATGAGCAATCCGCCTTCTTGGTCCAAACACGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012134-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.330 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.7=6.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGGAACAAGCAGATGGAG
R:
ACGTGTTTGGACCAAGAAGGC
Band lengths:
243-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]