MmuEX7008194 @ mm10
Exon Skipping
Gene
ENSMUSG00000056116 | H2-T22
Description
histocompatibility 2, T region locus 22 [Source:MGI Symbol;Acc:MGI:95956]
Coordinates
chr17:36041868-36042690:-
Coord C1 exon
chr17:36042570-36042690
Coord A exon
chr17:36042342-36042460
Coord C2 exon
chr17:36041868-36042128
Length
119 bp
Sequences
Splice sites
3' ss Seq
TACAATCGCTGTCGCTCTAGTTT
3' ss Score
5.63
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCAAGAAGGTGCAGGATGTAGGCCTGCAGAATTGTCAGACCCAGTGGCGGCTTTTGCCACTGGAAGAATTTCCAACATAAAACAGAGGATCAGTTTGGGACAATCGATTCTGCGACCAGAG
Seq A exon
TTTATAAAGCTGTCCAAGATCTGCCCAGTCCCAGATGTCCTGGGTCCTCAGGGCCGCTGTGGTCTGCGCCCTTCTCCTGCAGCTGGATGCCAGACCATCCTGGACTCGGATCCCTTTGG
Seq C2 exon
GTTCACACTCGCTTAGGTATTTCTACACCGCTGTGTCCCGGCCTGGCCTTGGGGAGCCCTGGTTCATAATCGTCGGCTATGTGGACGACATGCAGGTCCTGCGCTTCAGCAGCAAGGAGGAGACTCCGAGGATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATAACTGGGAGCAGCAGACTCGTATAGTCACAATTCAAGGACAGCTGTCTGAAAGGAATCTGATGACCCTGGTTCATTTTTACAACAAGAGCATGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056116-'0-6,'0-1,1-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
NA
A:
PF0012913=MHC_I=PU(0.1=0.0)
C2:
PF0012913=MHC_I=PU(53.4=98.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTGCAGGATGTAGGCCT
R:
AGTCTCCTCCTTGCTGCTGAA
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types