MmuINT0003184 @ mm9
Intron Retention
Gene
ENSMUSG00000030385 | 2900092C05Rik
Description
RIKEN cDNA 2900092C05 gene [Source:MGI Symbol;Acc:MGI:1920340]
Coordinates
chr7:13135833-13140124:+
Coord C1 exon
chr7:13135833-13135932
Coord A exon
chr7:13135933-13139966
Coord C2 exon
chr7:13139967-13140124
Length
4034 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
CTTTATCTCTCTTTCTCCAGTCG
3' ss Score
9.53
Exon sequences
Seq C1 exon
TAATTCCACGTAGGCCTGGACTTGTTCATGTAATTTCAGTTTCAAGTATAGCCTTTGTCATTGCCCTGCTATGTGGGCTCATGCTCTCCTACGTGATATA
Seq A exon
GTAAGTATACAACAAATAACCTCACTCAATTTTTTTTTGGTCTTGAAAAATGATTTTTATTTTAAGATTGGAATATTATATTTTTCATATATTTTCATATATGTTTTACACATATGTTTTTATATATTTTCATATATATGTTTACATATATATTTCATAAGAAAATTCTTAGAAAGAAGAAAACTAGTATTATAAGGAATAGAAGATTTGGTGGGATTGCTCATTGTTAGGTCACAGATGAGGGAGCCTAGGCCACAGTAGAAGACTTAGGATGCCAAAGCTAATGTCCTGATTTCTTTTTTTTTTAAAGACTTATTTATTTATTACTTGTAAGTACACTGTAGCTTCAGACACACCAGAAGAGGGTGTCAGATCTCATTACAGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATCTGAACTTCGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTGAACCATCTCACCAGCCCCTAATGTCCTGATTTCTAACAGCAACTTCTTCATAGTAGGCAGTGATGCTTCAAGTCTTAGGATGGGATGTGGTATATAGCTCTATAAACAGACTTCACCTTCCTCCTATCCTCCCCCAGGAAAAACCTGAGTTTCATAACCCAGCAAGAGTTAAACTGTGGTTCTATTGTTACCACTCCCTGCTTCCTCTTACTGACCTATCACTCTAAGTCAATCTCATGTAATAGCTTTCTTTCCTTGATTATACTACATACATAAGTGTCTCCCTTCCTTAGTCGTTGCCCTTTTGTTTTGTTTTGTTTTTTATTGGATATTTTATTTATTTACATTTCTAATGTTATCCCTTTCCCCAATTTCCCACCCAGAAACACCCTATCCCATCCCCCCTCCTCCTGCTTCTATGAGGATATACACCCATCCACCCACCCACTCCTATACCTCCCCACCCTCGCATTCCCTTAAACTGGGGCATTGAGTCTTCATAGGACTAAGGGCCTCTTCTCCCATTGATGCCCGACAAGGCCATCCTCTGCTACATATGCTGCTAGAATCATGGGTCCCTCCGTGTGTACTCTTTTGTTGATAGTTTAGACCCTGAGAGCTCTGGTTGGTTGATATTGTTGTTCTTCCTATGGGGTTGCAAACACTTCAGCTCCTTCAGTCCTTTCTCTAACTCTTCCATTGGGGACCATGTGATCAATTCAATGGTTGGCTGCAAGTGCCTGCCTCTGTATATGTCAGGCTCTAGTAGAGCCTCATAGGAGACAGCTGTATCAGGCTCCTGTCAGCATGTACTTCTTGGCATCCACAATAGTGCCTGGGTTTTGTGAATGTACATGGGATGAATCCCCAGGTAGGGCAATCTCTGGATGGCTTTTACTTCAGTCTCTGCTCCAAACTTTGTATTTGCTCCCATGAGTATTTTGTTACCCATTCTAAGAAGGACCAAAGGACCCATAATTTGGTCTTCCTTCTTCTTGAGCTTCATGTGGCCTGAACCTCACCCATTTTTAATAAGGCAGCAGGTACACAAGGAAATTATTTTGTGTCAAAAGATGAAGATAATGGCGATGATGATGGTAACATTTTTGTAATTACTAAGTAATTATGGCCATTATACATTTTCAGACCAGAGTTTGCCAAAATATGGATTGTTGGTCATACCAGAGAAGGAGGAAGAGGAGGGGGAGGGGAAGGGGAGGGGTGAGAACAAAGAAGAAAAAGAAGAGGAGGAGAAGGAAGAGAAGGAAACCAGACTAGATTAAAATTTAATGAAATGGAAATGCTAGAACCTTCCCAGTGTTGGGGTTATAAGTTTGTACCAACACATCTGGCTTTTTACATGGGTCCTTGGAATTTAACTCAGGGTCTCAGGCTTATGTGACAATTACTTTCCCTTCTGATTTTTAGAATTTAGATATTGGGGTGACGCTCTTATTTTTTTAATTAATTATTTTATTTACATTCTAAATGTTACTCCCCAGGTCCCCCCTCTCAAAATGTCTTATTTTTAAAATATATCTAAAACGTTTTTGTTTTTTGCAAATTTCACACAATGTGCTTTAATCACATTGGGTGGAGCTTTCAAAAGATGGCATCGTCATTTTGAAATTATTAGGCCAAATGGCATCATATTTGAACCACATTCTATAGCTCTGATTCAAAATTAGCCAAAGACAGTACAAAATTCTTCTAAAGTTGATGGCAACCTGAGTATGGCAAGTGAAGACATTTATAAGACTCAACTAATGGGAAGGACTTTTTTTTTATTTTTTCTTTTTTGAGACAAGATCTCACAGTTTTAGCTCATCCTAGCCTAGAACTTACCATTATTCTGCCTGTGCCTTGAGCTGGGAGTATATTTTTATAGCAAGATGCTGAGTATAGAGTGTTTGATATTTGGCTTATTGTGGACTGTGGGAATTCATATCAATGTTTGAAAATATTGAATTAAAGGTTGTCTTTAGTCTTGTGTATTTTTTAATCTTCTTAAAATTTGCTTCTTGGACCAGTGCCTCAATCTTCCTGAATCTACATCTTTACATTTAATGGAAAACAATTTTGCCATCTCACAGCATGTGTCTAGGATAGAGGTTCTCAACCTATGGATCTAAACTCTCTTAGGGTCCAAATGACACATTCACAGGGGCTTTATATCAGATATCCTAGATATTCAATATTTACATTATGATTCATAAAAATAGCAACATTGCAGTTATGAAGTAGAAGTGAAAGTAATTTTATGATTGGGGGTCACCTCAACATGAGGAACTGTATTAAATGATCTTGGCATTAAGAAGGTTGAGGACCACTAGTCTAGGATGTTCGTTCTTCCTGCTTTTTCTCTATCACTGCTCTTTAGAATACAATTAAGCTAATCATCAAAGTATTCTTTATTACCCAAGTCACATAGAACTAGGTACATAGTATGCTAGGAGAAAGTAAAATACTGTCATCTATTTCCACATCATATGGAATAATCTAGTTCACAGATCCACTTTTAGAACTGGACTGACAAAGGGGAGGCACAACCTCAAGTGCAAACCTTAAGGAGGTGTTTAAAAATTCACTAGTCAGGATGAACAATATTTTAATTTAGTGTCATAAAATATCAATACCCAAATAGCAATAGTTTACAAAATAATAGCATCTTTCTGTGTTGCTGTGTGTGATCAGAGGCCAATGTCTACTTCTGGTATCATTCCTCAGATGCCATTCACCTTGTTTTTTTATCTCTCTCTGGGATTTAAGACTAGGTTATATGGGTGGCAATGGGCTGCAGGAATCTGCCTGTCTCTGCCTTCCCAGGGTTGGGTTGCACGTATGCTCCATCACACCTGACTATTGATGTGGATCCTGGGGATTGAACTCCTTAGGCTTGTGTGATAATCTTTTTGCTGACAAACCTGTCTCTTCAGCCCCGTTAAGTACAGAGTCCATGCTAGGCAATGCCAAGGTATTAGTAAAAGGAACAATCTGTAACATCCTATATTTATTTAGAATCTTGACATTTTGTTCATTGTAGGTTTCTTGGCATTGCTTTTTATTTTGTATTATATTGCATTGATAATGGCTTTTTTTTTGTATCTTGAATTTTGTATTAGTCTATATATGTCATCCATACCCAGTACTGCTTTAATTATGAGGCTTGAAACTATATTTTTTGACATAAATCAGCTGGGCCAGATCAGAAATTTCAAGTTTCACATAAATGTGTATTTCTTTCTCTGTTCTCCACCTACCAGCATGTATAAGCAATTCCTCTTGATTCAAAATATTTCATGACCTTGGCTAGAGTGATGAATTGGGGGGATTAAGAGCATTCCATGCTCTTGCAGAGAACTGGAGTTCATTTCCCAACATCCAGGTAAGGTAGCTCACAACTACTTGTAACTCCAGATCCAGGGAATCTAATGCTTTCCTCCCTGTTTTCTTCATAGGCCCCTCTCCCAGCCCCACCCATACAAATATAAATACAACTTAAAAGGCTTCAGTGTTAAGACAGGATGGCTGACTGTAAAAAAAAAAATTGCCTTTATCTCTCTTTCTCCAG
Seq C2 exon
TCGACTGGTAAAAGTTGAGGAAAAACAGCAGCTTGCAATGTTGTATGAAAATATCGAGATTCCACTTGTAGATGAGAAAGAGGCCTCTGAAGATGATGGTTATGATGAATCTCAGTTGCATCCAGAGAATGAGGAGCTGGGAAAATTCATTAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030385-2900092C05Rik:NM_028434:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.185
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: