RnoINT0000368 @ rn6
Intron Retention
Gene
ENSRNOG00000019280 | AABR07002093.1
Description
NA
Coordinates
chr1:66189220-66193555:-
Coord C1 exon
chr1:66193456-66193555
Coord A exon
chr1:66189368-66193455
Coord C2 exon
chr1:66189220-66189367
Length
4088 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCCTTTCTATCTTTCTCCAGTCG
3' ss Score
10.3
Exon sequences
Seq C1 exon
TAAGTCCACATAGACCTGGTCTTGTTCATGTAATTTCAGTTTCAAGTATAGCCTTTGTCGTTGCCCTGTTATGTGGGCTCATGATCTCCTATGTGATACA
Seq A exon
GTAAGTATATAACAAATAACCTCATTCATTCTTAAGAAGGTGGCAGGTACACAAGGAAATTGTTTTGTTTCAAAAGATGATAATGATAATGGTGATGATGGTGACATTGTTTTCTAATTACTAAATAAATGTGGTCATTATACATTTTAAGACAGGGTTTTGCCAAAATATGGATGTTGGTCATGCAGAGAAGAAGACCGCGGGGATGGGGCAGGCCGGAGAACAAGAAGGAAAAGAGTGGAGAGAGGAGGAGGAGGAGAGAGGAGGAGAGGAGGAGGTGGAGGAGGAACGAAACCAGACTAGATTAAAATTTAGTGAATCGAAATGCAGAACCTTCCCATTGTGGGCGTATATTAAGTTGTGTACCGCAACATCTGGCCCTATGGTGGTCCTTGGGATCTTAACTCAGCGTCCAGACTTGTGTGACATATCACTTTGCCTCCTGAGTGTTTAGAATGTAGATATTGGCTAAAGCTCTTATTTTATCTCTACATTATCTGATTTATTTACCTTCTGAATGCTCTGGCCAGGTCCTTGTCAATAATATGGTGATCTTAATGTCATGTTTTTTATTTAATGTAATAAAGTGCAATAGCGAATATAAGCATTGCAGCTTATATTAAAGGAGCAGTAAATAACCGAAGTATAGAAACTTTGGGAAAAAAGCTTTGATCAGAGAAATTAATTTTAATATAAACTCCAAATTAATATAAAATTTACTAATGGGAACTTGAAAAAGGACTGGATAAATCATGACAGGAATTTCCTGTGCTTGTTTCTATAGGGCTAGCTCTGCACTGCGATTCCCTCATATTTTGTGAGCTCTGGGACTGACCCTCAGTTGAGATGGAAACCGTTATACTCAGGTTGATGAAAATACAGAAGAGAGCCAGTGACCGTTGATGTGAAAAAACACATTTATTGTTAGGGAAGGACTCGTTGCAAAGGTTTTTCATTTGGAGGGAGCTGGAGGAAACAACTGGCGTGATCTTGATACAGCTTCCATGACCTGTCCAGGGTACTTCATCTTCTTAAGAGTTGGTTCCTCATGACATGGGTCAGTTTCAGGCAGGTAAACAGTTTTATTCTTCTAATGTCGTGCCTCTTGTTCTTGTTGTCACAGGGCAGGATCCTACAGTCTCTATCGTCGTGCCCTATCTAACATCTTCCATAAGGTTTATGCCTTCATCAAGGTTATTTGATGTGCATGAAATGGATTTGCTGAAAACCTCCATCTTTAGTGATATGGGCTCGTCTCTCCCACCTGGCTCTGACTATTATGTAGGACACAGAGTTGTTTCTACAGGAGGACGCAGTTATCTTGGGGTTTCAGTTTTTATCGCTTTTTCAGAGGTTTCTCTTTCAGGAGAAAAGGTGGATTATAAGCCTCCAAGAGCTTCTCTTGGAACCAGTTATCGTTCTCCTAGTTGTCGGCTGAGGAAAAGTAGGTTAATGATCGTTATTGGCAGGTCCTGGTCAAGGAAGGCAGCGTGGGTGAGCGGTGAGCAAGGCACCATCGTGTTGCCACTGTCATCTAGGCAGTTATCTCTCACGTGGGGATAGCAGTGATGCCACTCTTTCTAGGCCTTGAAAACATAAGGCCAAGAACCTACACGTGGCATTCCTATTCCTGGGACTCAGCCTTGTAAACCACAAAGACCCACGGGAAGTCATGCTTTGTTATTGAATTCTAGGGATTAGCAAGCTGCACAGCAAGACCTATCTCCTTATATCTGTTTTTAATGATAATTAACGAACGAATAACGTAGCGCAAATGGCTATCCTCAGGAATGGTTATGGTGGGGGTAGCGTTTGTGTGATAATGTTCACTCTCGCAACGATGCCTTCGTGCATTGTGCTGAGTGGAAGGCTCTCTTCGAGAAAATACAGTGTCCTGTCATTTTCGACAATGTACTCTAGAGACCGACTATGGTTGTGCTTGACATAGACTTGAAAAAATGACTTGCGAGGTACAAACAAGTTTTATGGCTCTGAGCCAGTCTAGGATTCTATTACATCCTTCAAAAATAACCAAGGAAAGTACAAACTTCTTTTAAAGTTGATGTCAACCTGAGTATGGCAAGTGAAGACATTTATAAGACTTAACTAATGGAAAGGAGTATTTTAGCCCATGCTAGACTAGAACTTATCATTATTCTGTCAGTGCCTTAAGCTGGGAATATATCTATACACCAAGATGCTGAGTATAGGGTATTGGGTATTTGACTTATTGTGGACTGTGTGCGTTCATATCAACACTTGAAAATATTTAATTATGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCTGAAAAAAAAAAAAGAACCAAAAAAAAATAAAAAGAAAATATTTAATTAAAATAGTTATCTTTATTTCTGTGTATTTTTTTTAATTCTCTTAAAATTTGCTTCTGGGACCAGTGTGTCACTCTGAATCTACATCTCTACTATATTTAATGGAAAAAATTTGCCATCTCACAGCATGTGTCTAGGACTAAGGTTCTTAATCTATGGGTAGAAACCCTCTTAGGGTCAAATGACCCTTTCATTGGGGCTGTATATCAGATATCCTTAATATCAGATATTTCTATTATGATTCATAAAAGTATCAAAATTACAGTTATGAAGTAACAATGAAAATAATTTTATGATTAGGTGTCACCTCAACATAAGGAACTGTATTACAGATTCTAGGCACTGAGGTTAAGAACCACTGGTCTAGGATGTTCAATCCTCCTGCTTTTCCTCTATCACTGCTCTTTACAATGAAGCTAATCATCAAAGCATTCTTTATTACTCAAGTAACATAGAACTAGGTAAATAAGTATGCCAGGAGAAAGTAAAACACTGTCATCCATTTCCACATCACACAGAAAGATCTAATTAATTCACAGATCCACTTTTAGAATTGGACTGACAAAGGGGAGACACAACCTCAAGTGCAAACCTTAAGGGAGTGTTTAAAAACTCGCTATCAGGATGAACAATATCTTAATTTAGTGTTATAAAATATCAATACCCAAATAGCCACAGTTTATAAAATAATAGCATCTTTCTGTGTATGAGTGGGCATGTTGCTTGCTGTGTGTGGCCAGAGGCCAATGACCACTTCTGGCATCATTTCTCAGGTGCTGTTTATCTTAGTTTTTGAGACAGGATCTCTCTCTGGGATTTAGAACTCACCACTTAGGTTAGATATGTGGCAATGAGCTACAGGAATCTGCCTGTCTCCTCCTTACATGTGCGTACCACCACACCTGACATTTTACGTGAATGCTGAGGACTGAACTTAAGTCCTCAGGGTTGTGAGATAAACTTTTTTGCTGACCAAGCTGTGTCCTCAGCCCCAGTTAAGTACAGGAGCCATGCTGGTATAAGCCAGGGTATTAGAGGCTCTGTAAAAGGAATAATCAGTAACTTCCTATATTTATTTAAAATCTTGACATTTTATTTATTGTGGCTTTCTTGGCATTGCTTTTTATTTTGTATCATTTTGGTAGTGGCTTGAATTTTGTACTCAAAATATATATAATCAAAGCATTCTTTATTACTCAAGTAACATAGAACTAGGTACATAAGTATGTTTATACACACACACACATATATACATACATATATATATATATATAAATAAATGTATTCCACACCCAGTATTGCTTTAGTTATGAGGTTTGAAATTATAAGAGCATTTGTTGATATGGATCAGCTGGGAGCTAGGCCAAATCAGAAATTTCAAGTTTCACATAAATGTGTATTTCTTTCTCTGTTTTCTACCTACCAGCATATATGAGCAATTTCTCTTGAGTCAAAATATTTCATTATCTTGGCTATAGTGATGAATTGGAGGTTAAGAGCATTCCATGTCAGGTAGTTCACAACTACTTGTAACTCCAGATCCAGAGAGTCTATTTTCCTCTGTTTTCTTTGTAGCCTTCTTCCAACCCCACCCATATAAATACAAATGCAACTTTAAAAGCTGCAGTGTGAAGACAGGATGATAGACTGTTTAAAAAAACTGCCTTTACGTTCCTTTCTATCTTTCTCCAG
Seq C2 exon
TCGACTGGTAAAAGCTGAGGAAAAACAGCAGCTTGCAATGTTGTATGAAAATGTCGAGATTCCACTTTTAGAAGAGAAAGATTCTTCTGAAGATGAGTCTTCTCAGCTGGATCCAGAGAATGAGGAGCTGGGAAAATTCATTGGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019280:ENSRNOT00000026074:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.360
Domain overlap (PFAM):
C1:
PF113913=DUF2798=PU(81.2=76.5),PF062957=DUF1043=PU(28.1=47.1)
A:
NA
C2:
PF113913=DUF2798=PD(15.6=10.0),PF062957=DUF1043=PD(70.2=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]