MmuINT0003728 @ mm10
Intron Retention
Gene
ENSMUSG00000026940 | Ccdc183
Description
coiled-coil domain containing 183 [Source:MGI Symbol;Acc:MGI:1924308]
Coordinates
chr2:25610470-25611546:-
Coord C1 exon
chr2:25611446-25611546
Coord A exon
chr2:25610631-25611445
Coord C2 exon
chr2:25610470-25610630
Length
815 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CTCTGCCCTGGTCTGGTTAGGAC
3' ss Score
6.85
Exon sequences
Seq C1 exon
TGAAGAAAAGAAAAACTTCCGTAGCAGACATACAATACCAGACAAAAGTGACTACTTTGGTAGAGAGGGTCAAATCTGCTGTGCAGTGCTCCCACCTCTGG
Seq A exon
GTAAGTCTCCCTGGTACTTGGTAGCCAAGTTAGGCCAGGGCCTGGGATACTCTGCAAAACGTTCACAAAGATTAGACCTCCCATGAAGGTCCCCAAACATGATAATCCCAAGCCTGGGAAAAGTCTGGGGTTTTTGAGGTATGTAGCTCAGAAAAGAAGATACCCTCAGGGCCAGGCATGGTGGCGCACACCTCTAATCCCAGCACTTGGGAGGCAGAGGCAGGAGAATTTCTGAGTTTGAGGCCAATCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAATAAAGAAAGAAGATATCCTCAGCACATGGCTGGCTTGTCCCCACCATGTTCCATGTTCAGGACAGAGCCTACCAGAATCTGAAAATCCAAATGCTAGGAACCTGGCCTCTCGCTTCTGCTCTAGCCCCTTTCCAACTTGACAGCCACAGCGAACAGCTGCTTCTTATGGCCTTCTTTTGTCATAGACCCTCCTGAGTTCCCATTGTCAGGCCTTGAGCGCCATCCATAGCATCTTGACTGAATGTGATACAAGGTGTCTTCATGGTAGGTGAGGTTATTTATCCTCTGCCTACCATGAAAGCGATGTAACCAGGCTATATACAGGCTACCATTCTGCCCAGCTCCTCACAAACCTCAGCACCCAAAAGCACTCAGGGTCATGACTGAGCCCCAAGTACCAAGAATGTGCACTATCTACTACAAGGGGCCCCCGAGATACCAGGGCTAGGAAGCCCTGCTGCCTCCCAAGCCCACACCTGTGTCTCTCTGCCCTGGTCTGGTTAG
Seq C2 exon
GACATAGCTGGCCGCTTCCTAGCTCAGAAAAATACAGAGGAGAACCTGGAGCTACAGATGGAGGATTGCGAGGAGAGGCGGACACAGTTAGAGGCCCTGATGAAGAAGCTAGAACTTGAGGAGGCTGTGCTCAAGTTCCACCAGACTCCCAGCGCTGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026940:ENSMUST00000028309:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAAAGAAAAACTTCCGTAGCA
R:
CCAACAGCGCTGGGAGTCT
Band lengths:
262-1077
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types