MmuINT0004826 @ mm9
Intron Retention
Gene
ENSMUSG00000075302 | 4933404M02Rik
Description
RIKEN cDNA 4933404M02 gene [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70346876-70347758:+
Coord C1 exon
chr2:70346876-70347622
Coord A exon
chr2:70347623-70347712
Coord C2 exon
chr2:70347713-70347758
Length
90 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
AAATGTATCTACCACTCCAGGTT
3' ss Score
5.85
Exon sequences
Seq C1 exon
AGTAGCAGCCCGGGCACAAAAGGAAACCCAGACTTGGCCCGGGCTGGGTGGGAAAGGCGAGTCTGGTTCTAAACACCTGAACCGGATCCCTAGGAGAACTGATGTCGAGGTCCCCAGGAAACCCATAATCTTCTCGGGGCGATCTCAGGTGCAGGGGATTTTTGTTCATTCAGATCCAGAGGCACCCAGCCCTCCCAACTCAAGGCATCTTTTCTTCCACAAGTTGTAACCCCAATGAGGCCACCTCGCCCTTTTCCCTCCGCCACCTAGAGTCAGGATCAGGTATGGACACCGACCTTCCAGTCACCCTGTCTCCGGCCTTTCTCAAAGTAACCAGGATACGTGGTCAAGCCTGCCCCAGGGTGTGCGCCCCTAACTTGCCCCGCAGCGCGACGCCCAGTTCCTCCGGACGCTGGGCCACCCGCGCCGCCCGCTCCGCCCTTCGCGTGGTTCCAGCAGCTGGAACAGTTCCCGCTCCGCTCCCGCCCCGCGCTCTGCGCCCCGCCCCGGGCCCGCCGCGCTCCGCCCCGCTCGCCCCTCCGCTGCGTCGGGCTGTCCAGTCGCTGGGCAGCTCGGGTGGTTCCCGGGGCTCCTCCCGCAGCCCGTCCGGTCTCCATGGCAACGCGGCGTCCCAGGCTCGCAACTCGGAACCCACCGCGAGTGCGGAGCGGGGCTGGCCTTCCTGGTCTGCCCTTCGAGGAAACAACTTGGCAGGGCGGCCAGAGGGTAAGCAGCAGTGTGGTGACT
Seq A exon
GTGAGTAATTTACCCACACCCCTGGGAGTGGCGGGTCCCAGCCCGCACCTCCGACAACACTTAATCCTAAAAATGTATCTACCACTCCAG
Seq C2 exon
GTTGGTCCTGTGGAACCGCACGGCTGTCGAAATACTGCCCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302-4933404M02Rik:NM_025744:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.787 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGGTCTCCATGGCAAC
R:
GGCAGTATTTCGACAGCCGTG
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: