MmuINT0004826 @ mm10
Intron Retention
Gene
ENSMUSG00000075302 | Erich2
Description
glutamate rich 2 [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70508819-70509701:+
Coord C1 exon
chr2:70508819-70509565
Coord A exon
chr2:70509566-70509655
Coord C2 exon
chr2:70509656-70509701
Length
90 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
AAATGTATCTACCACTCCAGGTT
3' ss Score
5.85
Exon sequences
Seq C1 exon
AGTAGCAGCCCGGGCACAAAAGGAAACCCAGACTTGGCCCGGGCTGGGTGGGAAAGGCGAGTCTGGTTCTAAACACCTGAACCGGATCCCTAGGAGAACTGATGTCGAGGTCCCCAGGAAACCCATAATCTTCTCGGGGCGATCTCAGGTGCAGGGGATTTTTGTTCATTCAGATCCAGAGGCACCCAGCCCTCCCAACTCAAGGCATCTTTTCTTCCACAAGTTGTAACCCCAATGAGGCCACCTCGCCCTTTTCCCTCCGCCACCTAGAGTCAGGATCAGGTATGGACACCGACCTTCCAGTCACCCTGTCTCCGGCCTTTCTCAAAGTAACCAGGATACGTGGTCAAGCCTGCCCCAGGGTGTGCGCCCCTAACTTGCCCCGCAGCGCGACGCCCAGTTCCTCCGGACGCTGGGCCACCCGCGCCGCCCGCTCCGCCCTTCGCGTGGTTCCAGCAGCTGGAACAGTTCCCGCTCCGCTCCCGCCCCGCGCTCTGCGCCCCGCCCCGGGCCCGCCGCGCTCCGCCCCGCTCGCCCCTCCGCTGCGTCGGGCTGTCCAGTCGCTGGGCAGCTCGGGTGGTTCCCGGGGCTCCTCCCGCAGCCCGTCCGGTCTCCATGGCAACGCGGCGTCCCAGGCTCGCAACTCGGAACCCACCGCGAGTGCGGAGCGGGGCTGGCCTTCCTGGTCTGCCCTTCGAGGAAACAACTTGGCAGGGCGGCCAGAGGGTAAGCAGCAGTGTGGTGACT
Seq A exon
GTGAGTAATTTACCCACACCCCTGGGAGTGGCGGGTCCCAGCCCGCACCTCCGACAACACTTAATCCTAAAAATGTATCTACCACTCCAG
Seq C2 exon
GTTGGTCCTGTGGAACCGCACGGCTGTCGAAATACTGCCCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302:ENSMUST00000100041:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.809 A=NA C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGGTCTCCATGGCAAC
R:
GGCAGTATTTCGACAGCCGTG
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types