RnoINT0056325 @ rn6
Intron Retention
Gene
ENSRNOG00000056087 | Erich2
Description
glutamate-rich 2 [Source:RGD Symbol;Acc:1563852]
Coordinates
chr3:56802714-56803591:+
Coord C1 exon
chr3:56802714-56803433
Coord A exon
chr3:56803434-56803545
Coord C2 exon
chr3:56803546-56803591
Length
112 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
AATTTTATCTACCACTCCAGGTT
3' ss Score
7.35
Exon sequences
Seq C1 exon
GGCGGCGCAAAAGGGAACCCAGACTTGGCCCCGGGCTGGGTGGGAAAGGCGAGCCTGGTTCTAAACATCTGAACCGGATCCCTAGGAGAACTGATGTCGAGATCCCCAGGAAACCCATAATCTTCTCGGGGCGATCTCAGGTGCAGGGGATTTTTGTTCATTCATATCCAGAGGCATCCATCCCTCCCAACTCAAGGCATCTTTTCTTCCACAAGTTGTAACCCCCCAATGAAGCCACCTCGCCCCTTTCCCTCCGCCACCTAGAGTCAGGATCAGGTATGGACACCGACTTTCCAGTCTCCCTGTCTCCAGCCTTTCTCAAAGTAACCAGGGTACGTGGTCAAGCCTGCCCCAGGGTGTGTGCCCCCAACTTGCCCCGCAGCGTAACCCCCAGTACCTCGGGGCGCTGGGCCACCCGCGCCGCCCGCTCCGCCCTTCACGTGGTTCCTGCAGCTGGAACGGCTCCCGCCCCGCCCCCGCCCCGCGCTCTTCGCCCCGCCCCGGGCCCGCCGCGCTCCGCCCCGCTCGCCCCGCCGCTGCGTCGGGTGGTCCAGTCGCTGGGCAGCTCCCGTGGTTCCCGGGCCTCCTGCTGCAGCCCGTCCTGTCTCCATGGCGACTCGGCGTCCCAGGCTCGCGGCTCGGAACCCAGCTCAAGTGCGGAGCGGGGCTGGCCTTCCTGGTCTGGCCTTCGCGGAAACTCCTTGGCTGGGCGGCCAGAGG
Seq A exon
GTAAGCAGCGCAGTAATGACCGTGAGTAACTTCCCCGCACCCCCAGAAGTGGCGGGTCCCAACCTGCACCTTCGAACAGCACCTAATCCTGAAATTTTATCTACCACTCCAG
Seq C2 exon
GTTGGGCCTCTGGAACCCCTCGGCTGTCGAAGCACCCGCAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056087:ENSRNOT00000077551:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=NA C2=0.969
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCGGGTGGTCCAGTCG
R:
CTTCTCTGCGGGTGCTTCG
Band lengths:
227-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]