Special

RnoALTD0010620-1/2 @ rn6

Alternative 5'ss

Gene
Description
glutamate-rich 2 [Source:RGD Symbol;Acc:1563852]
Coordinates
chr3:56803333-56803591:+
Coord C1 exon
chr3:56803333-56803433
Coord A exon
NA
Coord C2 exon
chr3:56803546-56803591
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
AATTTTATCTACCACTCCAGGTT
3' ss Score
7.35
Exon sequences
Seq C1 exon
GGCGTCCCAGGCTCGCGGCTCGGAACCCAGCTCAAGTGCGGAGCGGGGCTGGCCTTCCTGGTCTGGCCTTCGCGGAAACTCCTTGGCTGGGCGGCCAGAGG
Seq A exon
NA
Seq C2 exon
GTTGGGCCTCTGGAACCCCTCGGCTGTCGAAGCACCCGCAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056087-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.679 A=NA C2=0.969
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGAACCCAGCTCAAGTG
R:
CAGCCGAGGGGTTCCAGA
Band lengths:
109-130
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]