MmuINT0005074 @ mm9
Intron Retention
Gene
ENSMUSG00000036770 | 4933433C11Rik
Description
RIKEN cDNA 4933433C11 gene [Source:MGI Symbol;Acc:MGI:1921722]
Coordinates
chr2:25068079-25069103:-
Coord C1 exon
chr2:25068809-25069103
Coord A exon
chr2:25068693-25068808
Coord C2 exon
chr2:25068079-25068692
Length
116 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGG
5' ss Score
4.84
3' ss Seq
TCAGCTCATTCTCTCTGCAGCCG
3' ss Score
9.05
Exon sequences
Seq C1 exon
TGGCCATCACCCGCCGAGTACACGCCGCTGAGCCAGCCTGCCTTCCCGGCCTTCAGCTTTGGAGACCGCCATCGCTCTGTTGTCAAAATGCCGGAGAGTCGCTTCCGCCCAGGGATGCTCCGAGCCCGAGGTCCTTGTAGCTATACCCCACTCTTGCCTACCTCAAAGCCCTCTGGCGAGAAGCGACCCAGCCCCAACACCTATAACATCCTTCCTGGGTACCGTCTGCAGAGCACACGCTCACCTGCCTTCTCCATGAGCCGGTCTCCTGCGTTTGCATCCTGGGTCAGCTCCT
Seq A exon
GTAAGGAAGACATAGAAAAAGAGTCTTGGCCTGCTTGGGGTTGGAGTGGGGCTTGGGCCGCAAGGGAGGGGAGGGATGCTGGGGTGACGACTAGGGTCAGCTCATTCTCTCTGCAG
Seq C2 exon
CCGGAACCCCAGGTCCAGCTGCCTACTACGTGGAAGACTGCTACAACTCACGCTTCCCATCTTCGCCTGGAGTAGTTATTCAAGGAGTGCGCAGACCCAAGCGCCACGACACAGGCCCTTTCTGCACACTATAGGCCCATCGGGTATAGGTTGCAAAGCTGACCTCTCTTGAGGCTTACCAAGGCTTCCTTTGGAACTCTTTGTCTATAGCCGGCTTTCTGATCCTCTAGACACCCCTCACCCACTCTTCTGGCTTAGGCTGTCCAACAAGAAGAGTCTTCCCAGAGTCCCCTTTCACCCCACTATACCAAGATGCAAATGATTCTTCTGAACTGTGGTCTCTGGTGTGCCTGGTTGCCCATCCTTTGCCCAATGGGCTGTCTTGAATATGTGGCTTTCTGCTTCCCTGGTATTTCTGGCTTTCTCTGTTCCTGCGTGGTGTTCTTTTCTTCAGGATTGAAATGGCAGTCTGGGAACTAACCCTAAGCTTTCTGACCTAGGATAGAATAGGAAAAGGCAATGTGGGACAATCTAATCCACTCACCTAAGGTCCAGCATCTACCTGAGGATCAGGGATGCTTGCTGGGCTGAGGAACTATTGGGATGGGATGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036770-4933433C11Rik:NM_028961:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=0.341
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGAGGTCCTTGTAGCTAT
R:
CTACTCCAGGCGAAGATGGGA
Band lengths:
247-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: