MmuINT0005451 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:20309496-20310509:-
Coord C1 exon
chr9:20310421-20310509
Coord A exon
chr9:20309623-20310420
Coord C2 exon
chr9:20309496-20309622
Length
798 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ACGTGTGTGTAATGGTTTAGGAT
3' ss Score
7.28
Exon sequences
Seq C1 exon
GCCTTCTTTCTAGAGAGCCTATCTACGTCTACGAAGCAAACATAGAGGTAGACGGGACGGTGACTGACAACCAGGCAAATTGTTACCAG
Seq A exon
GTAAAGAGAGAGGATATCATTCTACCAGATACAACTTCCCATCTGTGATCTAGAAGCATTTCCTTCTAGAGTCTGGAGTTGACACAGACTCAGTCTCTAGGGCTTTCTTAAAGGAAGTACATTCTCACTAGGGGGTGAAGGTTATCTTGTTGAATTTTCCTGGGGAACAGAGCCTTGCAAATCCTTCTAGCATTTTTGTTATTGCTTATTAACGTGTTTGCCTGGCTGGGGATTGAGCCAAGGCCTTTTTATCCATGCTAGGCACATGCTTTACTACTGAGCTCTATCCCCAACTTCACTAATTAATGTTTGCTTAGATAGAGTCTGGCTATGTAGCCTAACCTTGAACTCGCTAGCCCTGGCTGGTCTCAGCCTCCCTATCCAGTGTTGGGGATTACAGACATGGGCCCCCGCTAACTAATCTTGAGCTTCACTTACAACTGCATGTCTTTTGTTTTGTTGAGTCTTCTGACAGTAAGTCAGGTGAGAGCACCCTTTTCTCAGAAGCGCTGTTTATCCCATATGTACAGTTTGTTTAGGACTGTGCTGCAGTGAGACAGTAGGACCAGAAGAGCTGCTAGCCTGGCTGTGCTGGTAGAAATCATGCTTATAAAGTCATGGAACAGTAGAAGGTCGGCAGAGAGTGGGTGTAGAGAAAAGAGTTCCTGGGCCACGGAAGCCTGCAGCTTGAGGACGATCTGAGAACCATGTCTAGGGATTAGGTCCTCCTTCCTAACTTTCCATTGAGTACTACAAGACTGTTACTTGGCTCAAACCAACGTGTGTGTAATGGTTTAG
Seq C2 exon
GATTCAGTGACCTTCGATGATGTGGCTGTGGAGTTCACCCCGGATGAGTGGACTTTACTGGACCTGACTCAGAAGAATCTATACCGAGAGGTCATGCTGGAGAACTACGAGAACTTGACTTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
-5730601F06Rik:NM_001082485:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTTTCTAGAGAGCCTATCT
R:
ACTGAAGTCAAGTTCTCGTAGTTCT
Band lengths:
214-1012
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: