MmuINT0006495 @ mm9
Intron Retention
Gene
ENSMUSG00000030111 | A2m
Description
alpha-2-macroglobulin [Source:MGI Symbol;Acc:MGI:2449119]
Coordinates
chr6:121591003-121591458:+
Coord C1 exon
chr6:121591003-121591023
Coord A exon
chr6:121591024-121591289
Coord C2 exon
chr6:121591290-121591458
Length
266 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATTATGGCTATTTATTACAGGAT
3' ss Score
5.56
Exon sequences
Seq C1 exon
ATTCCTCTACTGTACATTCAG
Seq A exon
GTGAGTAACACCAATATTCTACAGTTAGAGAAAAAGCATCTATTTCAGAGGAAACCTTCTTTGTGGACTACTTACAACATGCCAGAGGAGACTTTGGGGAAGGGGGGAGCTCCCAGCCTACCCAGGAATGGATGGCTGGAACTCACCTGCCCTCTGAACCCTTCTCATTTGCTCTCTTTATGGGTAACATGGAAGTTTCCATAGATTTTTTTCATAATCTCTGATGTTCTTTGCACTTTTATGAATATTATGGCTATTTATTACAG
Seq C2 exon
GATTCAAAAAAAAATCGCATTGCACAGTGGCAGAATTTCCGCTTAGAGGGTGGCCTCAAACAGCTGTCCTTCCCCCTCTCCTCAGAGCCCACTCAGGGCTCCTACAAGGTGGTGATACGTACAGAATCAGGCAGGACCGTCGAGCACCCCTTCTCTGTGAAGGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030111-A2m:NM_175628:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(6.4=100)
A:
NA
C2:
PF0183514=A2M_N=PD(55.3=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: