MmuINT0006679 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:22983664-22994343:-
Coord C1 exon
chr17:22994217-22994343
Coord A exon
chr17:22989734-22994216
Coord C2 exon
chr17:22983664-22989733
Length
4483 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
ATTGCACATTTTTTTTTCAGAGA
3' ss Score
8
Exon sequences
Seq C1 exon
GAACTGTTAACATTCAAGGAAGTGGCTGTTGACTTCTCACAGGAGGAATGGGAATGTCTTGACTGTGCTCAGAGGGCATTGTACATGGATGTGATGCTAGAGAATTACAACAATCTACTCTTTGTGG
Seq A exon
GTAAGAATACTCTTCCTGTAGAATTCCAATTTCATCCTTTGAATTTACCTACTTTGTGATAATGTAAACTCTCTGAAATGTCTAGAGACTCCCAGAATAAGAGAAATTCTACTTACCAACATAACTTTTTCATGGTGTTTCCTTTACATTTCTCTCCATTCTCTGGAAGAGTAACCAGTAGTATGTTCTTTGTAATCTGTTATCTAGCTTTTAATCAAAACTTCAAAATTCAAAGAAAATTGAATGTTCAATGCATAGAAATATATTACTATATACATAATAATGGAACTATTTTAAACTTACTATTACGTTAACGTTTTCATTTATTTAAAGTTTTTCTAATTTATGTTTTAAGTTTTTTATTTGCTTTACATCCCGATCACAGACTTTTCTCCACCCATTGCCTCCTTCACACGGTACCCTGTCCTCTGAGAAGAAGAAGGTACCCCCCTGGTTACCAACCCACCCTGACATATCAAATAACTACAGGACAGCATATCCTCTCCCAGACAGTGCAGCACAGTTAGGAGAAACCGGATCCACGTGGAGATAACAAAGTCAGGGTCAGCCCCCCTTCTAGTTGTTGGAGTGCCCTGGCATGAAGACCAGGCTTCATATCTGCTACATATGGAGGGAGCATTGTCCAGCCCACATATGCTCATTGGATGGTGGTTTTTCATCTCTGGGAGCTCCCAACGTTCCAGAATAGTTGACTGTGTTGATATGTATATGGAGTCTCTATCCTCTCTGGGTCCCTCAGTCCTTCCCCCAACTCTCCACAATCCTCCTTCAGCTCCATCTAATGTTTGGCTATGATTCTCTGCCTCAGTTTCCATCAGTTGCTAGGTGGAAGCCTCTCAGAGGACCGTCATGACAGGCTCGTGTCTGCAAGTATAACAGAGTTATCAATAGTGTTAGGATTACTTTTTCCCTGTAGGATGGGTCTCACCTTGGGTCAGAATGGTTGACCATTCTCCTAGACTCTGCTTCCTCTTTGTCCCTACATTTCTTGTAGACAGGACAGATTTTTGGTCAAAGGTTTTATGGGTGTGTTAGTGTTTTAGACTTCTTCTTTTCCAATATGTATTTCTTCAATCTTCTTTAGTTGTCTTACTACTTTAACTAGAACTTCAAATACATATTGAATAGATAGGGAAAGAATGGACAGCCTTGTCTTGTCCCTGGAATTAATGGGATTGCTTTAAGTTTCTCTCCATTTAATTTGATATTTGCTGTTGGTTTGCATTTATTGTGTGTGGGTTTTTGTTTTTGTTTTTGTTTTTTTTGTATCTACCTTATATCCTTTATCTCTCCAAGCCTTTTAACGTGAGGGGTGATGGAGTTTGTCAAAGGCTCTTTCAGCATCTAATTATGATTATGTGGCTTTTTTCTTATGTTGGTGGATTTACATATTGAACCACCCCTTTATCCCTGAGGTGAAGCCTACTTGATCATGGTGGATAATGTTTTTAATGTGTTCTTGGATTTACTTTGCAAGTATTTTATCAAGTAGTTTTGCATCAGTGTTCATAAGGAAAATAAGTATGAAATTTTCTTTCTTCTTTGAGTCTTTGTGAAGTTTAGGTATCAAAGTGACTTTGGCATCATAGAATCAGTTGGGAAACATTGCCTCGGTTTTTTGTTTTTGTTTTTTTTTTTTTTTTTTTTTGTAGAATAGTTTGAGGAGTATTGGAGACATCTTTAAAAGTCTGGTAGACTGCCACTTTTATTTCATTTTGAATTAATGATTATTGAGTAAAGAGTTGTTCAGTTTTCTTGAGTTTGTTGGCTTTCTGTTGTTGTAGAAATCCGGTCTTAATCCATGGTATTCCAATAAGATGGCAAAGGTTATTTCCATTTTCTTTTATCTGTTGAGGTTTGTGTTATGGCTGAGTATATGATCAGTTTTGGAGAAGGTTCTGTGAGGTACTGAGAAGGTATATTCTTTTTTGTTTGGGTGAAGTGTTCTATACCTATGTTAGGTAAATTTCATTCATAACATTTGTTTGTTTCATTATTTTTCTCTTTTGTTTCTGTTTCAATGACCTTCCTTTGATGAGATTGGGGCATTGAAATCTCCCAATATTAATCTGTGAGGTTCGCTGTACAATTTAAGCTTTACTAATGTCTCTTTTATGAATATGGGTGCCCTGGGATTTGGGTCATAGATGTTTAAAATTAATGTCATCTTAGTGACTTTTCTGTTTAATCAGTATGAAGTGGACTTCTCCATCTTTTTCGTTACTTTTGATTGAAAGTCTATTTTATTAAATATTAGAATGGCTTCCTCTGCTTGTTTCTTGGGGCTGTTTGCTTGAAAAACCTTTTTCTAGAACTTTACTCTGAGGTAATTGCTACCTTTGTTGCTGAGGTGTGTTTCTTTTATGCAGCAGAATAATGGATCCTGTTTTCATATCCATGGTGTCAGTCTGTGTCTTTTTATTGGGGAAGTGATTCCATTGATATTGAGAGATACAAATGACCAGTGAATGTTAATTTCTGTTATTTTGATGTATATGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGAGTGTGTGTGTATGCGTGTGTTTCTCTTGTTTTGGTTTTGCTGGTGTGCAATTACTTATTTCTTTTCTTGGGTGTAGTTACCCTCTGTATGGTAGAGTTTTCATTCTGTATCCTCAATAGAACTGAATTATTAGAAAGACACTGTTTAAATTTTCTTTTTCCTTGTATTCCTTATATTTTTAGGTTTGGTCTTTTCATAGTATCCCAGATTTCTTGAATGTTTTGTGTCATACTTTTATATTTATCGTTCTCTTTGATCAACATATCAATTTTGTCTATTATATCTTCTACACCTGAGTTTTTCTCTTCAGTTTCTTATATGCTTGTGTCCTTAGTTCCTGTTCTCTTTCCTAGGTTTTCCATCTCCTAGATTCCCTCATATGGTGTTTTCTTTATTGCTTTTATTTTTGTTGTCAACTCTTGATCAAGTTTTATTCATTTTTCACCTTTTTATTGTATTTCCTGTATTTCTTTGTACTTATTCATTTCTTCTCTAAAAGCCTCTACTGTTTGATTGTATTTTCCTGAATTTCTTGGAAGGATTTATTTATTTCCTCTTTAAAGTCCTCTGTTATCTTTATACGATTAGATTTAAGGTCATTTCTTGCACTTTAGGTGTGATATGATATCCAGGGCTTGCTCTACTAGATAGCTGGGTTCTGGTGGTACCATATAGCCCCAACATACCAAAACACTGTATGATGAAGCTTTTCTCTCTAAATATAAACTCATGCTAAAAGGAAACAATAGTGGAATGAAACCACACAAGTGCAGGAAGTCTGGAAAATTCTTCACGATGACCTTCATGTCCTTACACTAGCTTTTCACCATCATATTGTCCCTGGTGTTGACAGCCCTAGTAGGTCCTGGTTGCAGCAGAATCTGGACTGCAGATAGGACTCTTAGACCCAGGTGGCAACACACCTTTGGGGATGAAGACAGAGATGGTAGTCTCAGATAACAGCTGGCCTTCTTGGGTTGCAGGTATTCCTGCTTGTCCCAGATGGTAGTAGGCCTTCATGAATGCAGACAGAGCTGTTCCTCCATGATGTTATAGGCCTCTGGAGTTGCAGATAGAAGTATGGACTGGAGGATAGAACACAGTGGAGGTAGGGAGGTTCTCACCACTGCTTGGGATTGCTGGGGATCGCAGTGGGCAGAGACTTGGGACATGGGGATCTGACCTGGCTGTCCCAGGTTCCAGGAGACCCCCAGAGAGAGGCAGAACTGTGGCTCAGAGAATAGAGGACAGGGAAGGGACAGGACAAGACTCACTGTTGCTGGTCCCTGATGGCTGCTAGTCTCTAAGATTCTTATTTGTGGTTTTTGGAAATGCAGATTTTAAGTAGAGAAAGAACTGTTGGTTGGGAGAATTTCGTTTTTGCTAATGTATTTACTTTTTCCATATGGACTGTATGTTTAGTACCGGTACAGTATGTTCTTCATCCCAATACTTCAGATACAGAAGCAAGGATAGAGGTTGAGTACCATGACACTGTGAGTTATATAGTGAATTCCTAAGTGACCAAAGCTATACTCTGTCTTAAAGCATAAACAAGAAAGTAGAGAAACATTGCTTATATGATACTTCCAAAAGCTCCTTTCACAAAGTTCTTCACTACATGATCACTTATTTGTCATATCTTCTGTAGGATACACTATTTAAATAAGAATTATCATCTCCATTCATTTGATATAGATCAGATTTGAGTTTCTTCTGAGCATCCAGTTAATGATTTTGAAACACAAAAGAACTCTGTTGAGACCTTTATCCTGGAGACTTGCTAATTTAGCTTTTTTAGAAAATGTACAAGAAGCATCCACTATTGAATCTCTTATTCATGCATTAATCACTGTCATCCCTAATTGCACATTTTTTTTTCAG
Seq C2 exon
AGAATAATCATCATGTGTGTGTCAAACATGATGAAGTCTTGGGCCAAGGCTCAAAGTATAGTGCCCCTGAGCATGTGAATATTCAAGAGAAGTCTAATAAATGGAAGGAATGTGGCAAAATGATTCATGAATCCTCCAAAAGTACACCTTATCAAACCAACAACAGAGATGCCTCCATTGAATCATCAAACAGACACAAAACTGAGAATGCCAGGGAACCATGCAAGTATAAGGACTGTGTGAATGGCTTAAATTTGTATCCCATCACTTGTCACAATCAAACAGTGTACCTAGAAATAAAAGAACATACCAAAACACTGTATGATGAAGCTTTTCTCTCTAAATATAAACTCATGCTAAAAGGAAACAATAGTGGAATGAAATCACACAAGTGCAGGAAGTCTGGAAAATTCTTCACGATGACCTCAAGCCTGAGTGGGCATCCGAGAGATCATGCTAGAGAGAAGCCCTATCAATGTACAAAGTGTAGTAAATCCTTTCTGCATTTGTCACACCTCCAACTGCATTACAAAATCCATTTTGGAGGATATCCCTACAAATGTACAGAATGCGGTAAGTGCTTTTATCATGCATCAGGCTTTGAAAGACATTGCAGAATCCATGCTACAAAGAATACTTACAAATGTAGTTTTTGTAGCAAATCCTTTATCTGCTGCTCAGGTCTTAGAAAACATCAGAAAATTCATGAAGAAAACAGGCTTTTTGAATGTAACCAAGATACTAGATCATTCTGTACATTTTCCTACCGTGAATGCCATTACCGTGCTGATATAAGAAAGAAATGTTACAGATGTAAAGAATGTGGCAAATCCCTTTCTACATCCTCAGGACTTAAAATACATCAGAGAATTCATACTGGAGAGAGACCTTACAAATGTGGTGACTGTGACAAATCTTTTACCCAGAAGAGCAATCTTAGAATGCATCAGAAAATTCATACAGGAGAGAATACTTACAAATGCAGTGAATGTGACAAATGCTTTACCCAGAGATGCCTTCTTAGAACTCATCAGAGAATTCATTCAGGAGAAAAACCTTACAAATGTAGTGAATGTGGCAAGGCCTTTGCTGGTGGCTCATATCTTAGAAGTCATCAGAGAATTCATTCAGAAAAGAAGCCTTACAAATGCAGTGACTGTGACAAATCCTTCCACCGGAAAGACCACCTTAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTTATAAATGTAGTGAATGTGACAAATGCTTTACCCAGAAAGGCAGTGTTAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTAAATGTGATAAATCTTTTACCAAGAAAGACTGTCTTAAAATTCATCAGATAATTCATACAGGCGAAGAACCTTACAAATGTAGTGAATGTGACACATCCTTTAACCGGAAAGACCATCTTAGAACTCATCAGAGATTTCACACAGGAGAGAGAATTTACAAATGTAGTGAATGTGATGAATCCTTTACCCAGAAAATTAATCTAAGAATTCATCAGAAAATTCATACAGGAGACAACTCTTACAAATGTAGTGGATGTGACAAATCCTTTAACCGGAGAAACCATCTTAGAACTCATGAGAGAATTCATGCCGGAGAAAAGCCTTACAATTGTAGGGAATTTGAAAATTCCTTTATCCAGACTGGCTCTCTTAGAATTCATCAGAGACTTCATTCAAGAAAGAAACTTTACAAATGCAGGGAATGTGACAAATCCTTTACTAGCAGCTCATATGTCAGAATACATCAGAGAATTCATTCAGGAGAGAAACCTTACAAATGTAGTGAGTGTGGCAAATGCTTCACTAGTGGCTCATATCTTAGAATGCACCAAAGAATTCATACAGGAGACAAACCTTACAAATGTAGTGACTGTGATAAATGCTTTACTCAGAAATGCAGTCTTAGAATTCACCAGAGAAGTCATACAGGAGAGAAACCTTACAAATGTGGTAATTGCGACAGATCTTTTACAAGTGGCTCATATCTTAGAATTCATCAGAGAATTCATAGAGGTGAGAAACCTCATAAATGTAGTGAATGTGACAAATCCTTTACCCAGAAAGGCTATCTTAGAATTCATCAGAGAATTCATAAAGGAGAAAAATCTCACAAAGGTAGTTAGTGTGAAAAATCCTTTACCCAGAAACCCTAACTTGTGGAACTTTTCAAAGAATTCATATAGGAAAAAAAACTTAAATATAGGGAATATAGCAAATCCCTTCACAGGAAAACTGTCTTAGAACTTATCAGAAATTTCATACAGTAAATAAAACATACAAATGTATAGAATCTGATAAATCTTTTACCCAGAAAGGCTGTCTTAGAATTCATGAGACTTCATTCAAGAAAGAAGCTTTATAAATGTGACAAATCTTTTACCAGGACAAACTATCTTAGAACTTGACAGAGATAACAGGAGAGAAACTTTACAAATTTGGTGAATATACAAATCCTTAACTATTGGCACACCTCTTAGAATATCCCTCATGACACATAAGTTTCCACACTAGAGAATAATTATGATCAAAAGAAACTTGTGAAAACCTTGAGTAATGTTCAAATCTTAGAAAATACCAAGAGTTTATGCTGAGGGAAAATCTGAAAATGTGACAATGTAGGAAATTTTTTCTTCAACCTTTTTACTTGTTAAACTTAATACTTTGTTTGACTTTTAGTCAGTCTTTCAGCTTTGCTCAAACTTTATTAAACTTGTTCATCCTCAAATAATTCATAATGAGGACAAAATGGAGAAGCCAGAAGAATGTGATATTGTGTAACAGTTTTCTGCAGACTGAAATGACCCATTCTGAAGGGATTGTGATTAAGACAGCAAATACATACCTCAAAATAGCTTCAAGAAATCCCTGAAAGTGACAGCATTGTCTGCTTAAGTCAAATGATGAAACCCAGAAAAGAATATACCTCTTAAAAGAGGATTTTACAAAGTGTCAACAAAATAGGATGCATTACTAAATGAATTATTACACATTAATTTTTCCATCTGAGAGGTATAAATGGTAGAATGTAAATACTGTTTTCAGAAATGTATAATTATATGCTAAACTGTTAATGTTAACCCTTATGGTGTAAAATAACTGCACTATGTATGCTGTGAGAATATCAGGCTATACTACATTTATAGATGGAAAATTCAGTGTACATTAGGACAAAATTCAAAACCATCTTTTAAATAATTATGATTCATCAATTATGTTAGAAAAATTTACTCTAATTTTCTTATGTCTCCTGCGTTCATCAAAAGCACTATTCACATTGATGAATTGTTAGATTACCTTGGTCTTGTTTCTTTTTGCTGGGTATATATTTCAGTGTGCTACCCTGTCTGTGTCAGAACACCCAATGTAGACCAAGCCTGGACTCTGCCTCCTGGATGCTAGAATTAAAGCACTGTACAGAATTTGATGATAGTTCTTATCATTATGCACTTCATTCAGGAGGAATTGTAATGTCCAGGCCCTAATTACTGTGCTTTGTACATAGATTTGATATTGAAGAATTGCAGTAGTCATGTTTGTGTGAATGCAAATAGCATGCTGCACTCTGTATCGAGCCTTGGGGTTCTAGTGAAAACATCAAATGTGTGATTTCTCTGGGAATGATTCATACATCTCACAGAAAAAAAAGGAAGAACTTCAGAGTAGAAATAAACATTGCATGGTATTTTCAATTCTTCACATTGGTCCTTTGGGCAGTTGTAAGGCTTCTTTTATTTCTGTTTTGTGATAAATTAAGAAACTCAGGAGTGTAAAATAGTCATCCCAATTATTCTGCTCCATGCTAGTGATGGAGTTTCAATCGATCTTTGAGTAGGAGTGGTGGAGATCAAGTTATGCTACCTAAAACCTTTCTCTAAGGAGTTATTACTGTGACATTACATGATAGTTGAGTCTTGTAGAATATCTTCTATGTAGTCTTCCCTTTATTTTCAGAGCATAGCACTGTGTTAGAAATCCTAGATGTTTTGAAAAAGTCACTTTCCCATAGCTTGGGCTGAATGAAACAGACCAGAGACCTGGAATGTATACTGAACTTAAAATGAATAAATGATACCAGATATTCTGCAGGAAATTGAGGTAGGAGTAATGGAAGATTCAAATGACATTGGAAATAGAATGAAGAAAGAAGTTGGCTCAGCAGCAGGTAACACTTGATTTTCTTGAAGAGGACATGAGTACATTTCCCACCACCAGCACAGTGGCTGACAAAATTCATAATTTTAATTACAGTAGATCAGGTGCTTTCTGGCCTCAGCACCTACCAGCCACAAGCAAGCTACATGCATACATGTTGTAAAACATTGATACATAGAAGCTAAAGTAAATAATCTAATGAACATTTTAAAGACAAACGTGTAAATGGGAAATGAAATATTGATTTTCTATATTCTGTTTCTCTAGAAATTAATCTAGAATATACTGTAATGTCAAGATTATCCTATTGTGTATGTTACTGACATTTTATGTAAGCATAATAGGGAAAAATATAATTTGTTTGACTGTGTACGTGTCCCAGGTGTGCACATATATCTATTATATGAATGTCATTGCTTTCATTTTAGGATACTTGTAAAACTAGAAATATTTCTGCCTCTTAACTTTTCCCCCTAATCTAATGTTAATTGTTTCTGTTGTTCCTTTAATGTCTTTCTTTTGTGGTCAGTTTTGGGTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTTGTTTTTTGTTTTTCCATTTCCTAATATAATACCAGCAGGACTTTGGTTAAAATTGCTTAGTATGTTTACACAGTATTATACTTTGTCTATATTGTCTTCTTCTTGACATCTCTTGTTTTCTCTCTTCACACCATTACTCTATGATATCCTTTGCAATAATTATAAGAGATTTTGGATCTTGGTTCAACCTTCTGAATAGTTTTTTAATTCTTTCAGCTTTCTTGAATGTTGATATCTTTTTAATATTGATTTGTTCACTTTGCAGTAATTGTCCATTCCTCTTGAAACAATTTGATTGCAAACTTTAGGAAAGTGAAAATTCTTGCTGATGGTGTTCCCATATGATGAGAATTGGATAGGGGTTCCTTAGTGTTGACATGTTGTACATTTATTTTTCTTGTTGTGTTGCTATTTATGTGCATGTCATCAGTGCGTAACGACTCATTGCAAGAATCTACTACAATTAGTCATATCATAAAAAAAGCATATGTGTGATAAAGTTAATTTTATGTGAACTTTTGCCTGTTTGATGATTGAAGTTACACACTGACTTATATGTTGACTGCAGTAAGTTGGTAGAGTGTGTCTCCGTTCTTTCATTTACATTTTCTGCAGAATTGATTATTTTTTTAGTATAGTTAGTATGCCCAGTGACAAGGCAGAGAGGGATTTTGAGTTACACTCTCTTGTGTGGCCAAAAGCTATTGACTTGTGGCAATTAACTCCTATTTTAGCAGCAAGGAATTTAGTAAAGAAGTCAGTTACTTGGGTTCTTTGTTCTTTGACTTGTGGACCCCTCTCTACTCACTTGAGAGGCGCAGACTTTAACTCTTTGTGAGCCAGAAAAAAAAGGAAGAAAGTCACACATACAAGAAACACATTCACTCTATATGGAGCAGAAAAAGAGGCTCTCAAAAACCTTTGTTGCTGAGATAAAGAAAAGCTCCAACCTCTCCTTTTATTTCTGTTCTCAGTATGTCTACTGTCTCTAAAGAATTACCTCATACAATTCAAGTAAAACTATTACAACAGGATAATTGATTATGACTTTCTAAAAACGTTTACATTCTAATAAGTTCATAGTAAGTTTAAGGCAATAATTCTTGTCATAAGTTGATAAGACGTCCTGAAGATAGAGATGATACCCACCCATCTTCAAATTTTTTGACCCATAATTGTTCTTGTTTAAAGGAAATGCAGGCAAAAACATGGAGCAGAGACTGAAGGATAGGTCATAAAGTGACCAACCCACCTTGGGACCCATTCTATGTGCACACAATAAACCCTGACATTATTAC
VastDB Features
Vast-tools module Information
Secondary ID
-A630033E08Rik:NM_001110254:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: