HsaINT1047418 @ hg38
Intron Retention
Gene
ENSG00000197937 | ZNF347
Description
zinc finger protein 347 [Source:HGNC Symbol;Acc:HGNC:16447]
Coordinates
chr19:53148681-53149367:-
Coord C1 exon
chr19:53149241-53149367
Coord A exon
chr19:53148810-53149240
Coord C2 exon
chr19:53148681-53148809
Length
431 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TCCTTTCTTTTCATAAGCAGGAA
3' ss Score
7.78
Exon sequences
Seq C1 exon
GGACAGGTGACATTCAGGGATGTGGCTATAGAATTCTCTCAGGAGGAGTGGACATGCCTGGACCCCGCTCAGAGGACTTTGTACAGGGACGTGATGTTGGAGAATTATAGGAACCTGGCCTCCCTGG
Seq A exon
GTGAGGATGACTTTCTTCCAGAAGTCAGGATCTGCCCCTGTGTATCTTTTCATTTTCCATGTGGCTCTCCTGGGAGCTCATGCATTGCTTGGCTGAGACTGAAGCTGTGTTGACTGAAAAATGAAAATCTCCATAATGTGGAAACTGGATTTTAATTTTCCTCTTCCTGATGTCACTGGAGGGTTTCAGGACTTTTAAAATATCCAATTCCCTGTTTTCTATCCCCATGCTTTGATTCAGTGGTTTTGGGATGAGAGCTATATATTTGCATATTATAGTGTTTCCTAACAATTTATAAAGAAGCATTTAGTGGATGAATTTTTGAAGTGTTTTTTTAGATACAGCTGTAAAGTCCTCCCTCCTCATGTAAACATAGGACTGGGACTCTGGAAAATCTACAGCCCATTGTTTTCCTTTCTTTTCATAAGCAG
Seq C2 exon
GAATCTCTTGTTTTGACCTCAGTATTATCTCTATGTTGGAGCAAGGGAAGGAGCCTTTCACTTTGGAGAGCCAAGTACAAATAGCAGGAAACCCAGATGGATGGGAATGGATCAAAGCTGTGATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197937:ENST00000334197:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACATTCAGGGATGTGGC
R:
ATCACAGCTTTGATCCATTCCCA
Band lengths:
246-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains