BtaINT0006108 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MV65]
Coordinates
chr18:58706623-58711966:+
Coord C1 exon
chr18:58706623-58706749
Coord A exon
chr18:58706750-58710989
Coord C2 exon
chr18:58710990-58711966
Length
4240 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GATTTTTTTGTATTTTGTAGATA
3' ss Score
9.52
Exon sequences
Seq C1 exon
CAGCAGATGACCGTCGAGGACGTGGCCATCAAATTCACTCCTGAGGAGTGGGAATGCCTGTCCCCTGCGCAGAGGACTTTGTACTGGGACGTGATGCTGGAGACCTACAGGAACCTGCTCTCTGTGG
Seq A exon
GTGAGGATCACTTCCCTCTCAAGTTGGGATCTGTCCTTGGGTATCTTTACATTTTCCCTCACATGCCTTTTTGGAGCCCCTACCTTGCTTGGCTGAGCTCGAAGCTCTATTGAATCAGAGGCCAAAAGCTTCATAATGTGGCATGAGGACTTTGAAATTGCCCTTTCCTCCTTTGATCTGCCCGTGTTATGATACCTTGAGGGTGGGTCCAGAGCTTGAAAATGCATAAAGCCTGTAGCAAACTTAAAACCTACACTTCCCTGTTTTGAAAATTTTATTTATTATTTTTTGGCTGTGCTGGGTCTTTCTTAGTTGCAGTGATCAGGGGCTACTCACCAGTTGCGGTGCTCGGGCTTCTCATTGTGGTAACTTCTCTTGCTGTGGTAGGCGGGCTCTAGGGCGCAGGGTCTCCGCAGTTGTGGTGCACGGGGTTAGTTGCTCTGCGGCATGTGGGATCTTCCTGAATGAAGAATTGAACCTGTGTCCCCTGCACTGGCAGGCAGATTCTTAACCACTGAGCCACCAGGGAAGTCCCACTTACCTTTTTACTACAAGCAAGATGTCTGCATATTACACTCTTCCCTGTGTATTCACTTGATCTTAGCCAAAAGGCTAAGAAGCGATTCCCCTGTGCATTCAGAAGGAGGCAAGCCGAGGATTGAAGTGTTTTCCACAACCGCCCCATATTGTCCTCACTCCTCAGCTGAACAAAGAGCTGGGGTTCTGGAAACAATATAGCATGTGATGTTTCTTTCTTGCAATTAGCAATAATTTCTTTTTCTGACCTGACTATTCTTATGTCCATTTTGGAGTAAAGAAAAGAGAGCACTGGACCCTGGAGAGGGAAGTGAAAATAGCAAAAAAGAAAAGAAAAAAGGGAAAAACCACTAAAGGGGTGGAAAGTACCATGTGTAGACACAGGTCAGATCTCAGATGAACGGAGAAGAAACTGCACCATTAATAGTTTCAGGGAATCTCTCCCCAAGGGGAAGAGTTCTGTGGGAAAACAGTTTATTTTTTGGTAAACTCTCAGAGGAAATTGTTGTTCTCCCCATTGTTTCACTCCATTCTTTAGTATGTAAAATGTATCTCGTCCTCCTGTGGTGCCACAGCTCCTACAGAGACAAAGGCAAGGTCTTTATATGATCTACAACAGCCTGTCATTTGACTCCTGTCAGCTTTATCTCTTGACTTTGAGGAACGTGGGATGGGCTCTTTCAGAGGGGTCTCTTGCCCCTGCGTCTCCACTTCTGTGTGTGCTTTCATTGGCTGCTCAGTTCTTGGTCCCTGCAAGTAAGAGCTGAACTGCTCTGTAGCACCACGCTCAGCACCTGTCCTAGTTCCATCCCTACTCACTCTTCTAGGAAGATGTAGTCAAGGAGGTAGGAAACCACTGGTGCTCTCTGATTCTATCTCTCACCCTAGAACCTGCACGGAGCTGTCTCAAGCCCCATCTGCCTGTTCAGATCCCTCAGCCCTTCCTTCTGGGATTGTTATGTAGGAGAACTGTAAAGCCAGTAGACAGATCTTCTCTTTGATCCTAGGTCCTACATGGGGAGCATACGTCGGCCTTTGAGATTCTTAACTCAGTGTCTGTGAGGAGAGCGCACATCTCAAGATCCTGCAGGATCCCCCCCTCCTGTCTTGTATTTTCATCACTCTTCCACTGCTCTACCTGGTCTGGGAATGTAGACTTTTCCTGATTGCCTATTGTCTTAAGTTGCCTCTGATGATTGCCTTTGAAATACACATTCCTAGGATCTGAGATTTTATCCTATATTTTTTTGCTGTGATAATAACACTTTTAAGGGATAGACAACTTCTAGGGACTCTCCTTATGGAGTAGGGTTATTTGGTGACAGAAACTTCCCCCCCACACACCCCGAGACTTTTTTTTTAATTGAAGTATAGTTGATATACAGTGTTGTATTGTCTTCTGATGTAAAGCAAGGTAATTTAGTTATACATACGTATACATTCTTTTTTTTATTGTGTTTATCACAGGATATTGAATATAGTTCCCTGTGCTGTACAGTAAGACCTTGTTCTTTATCTGTCCTATATATAATAGCTTGCATCTGCTATTTGCAAACCCCCAACCTGTCCCTAGGCATGCACACTTGGCCACCAGATGTCTCTTCTGTATGCCTGTGAGTCTGTTTCTGTTTCATAGATAAGTTCATTTGTGCTGCATTTCAGATTGGACATACAAGTGATATCATATGATATTTGTCTTTCTCCTTCTGACTTATTTTGCTTAGTATGATAATCTCTAGGTCCATCCATGGTGCTGCAAATGGTACTATTTCATTCTTTTTTATGGATGAGTAATATTCCAGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATATGTGTAGACACACAACATCTTTATCCATTCATGTGTTGATGGTCATTTAGATTGTTTGTATGTCTGGCTATTTATAATAATAAATAGTGCTGCTGTGAACATAGGGGTACATGTATATTGAAAAGAGTCTTTTTACTTATTTTTCATTTAAAAATTTTTTTATTTTTGCCACATCTCAGAACTTGTGGGAACTCACTTCCCTGACCAGGGATCAAACCCAGGCCATAGCAGTGACAGTGCCAAATCCTAAACACTAGACCACCAGGGACTCCCAGCATCAGGCTCTTGCTTCTTTCACTTTCTTTGTAATTCTGGGTTATGTACATAGCCTTCTAAGTCTTGTGCCCTCATTTGAAAAATAATGGTAGTTTACCTCAGGCTTTTAAAACAAATATGTACTGTTAGATAGCTTATATATAATAATATTGCATATTTTATAGAAAAGCTCTAAGTTACTGTTGTTTAATGATATATATCTACTTTGTCATGTTTTGTTATGCTATATCCCTTTGTGTGCATTATAGTTTATATGCTTTTATTTTGCAGTTTGTCCTCAACAATGTAGTCTGTGACCTTAGTTAATATACATTTTAGGCACACACTTCATACTACATATCTGGGGACAATAAGCTGGAGAATTAAAGGGCACTGCATAGATAAGAAATTGCTCTGCTTGGTTATTATATAATGGCAATCATGAAATCATGTGACTTTTGTCTTCTTTCTTCAGGTTCTGTTCTTTTGTTGTTCATTCACAAAGTCATGTCCAACCCTTTGCGACTCCCATGAACTGTAGCATGCCAGCTTCCTCTGTCTTTCATATCTTCCAGAGTTTGCTCAAATTCATGTCCACTGAGTCGGTGATGCTATCTAACCATCTCATCCTCTGCCACCCCCTTCTCCTTTTGCCTTCCATCATTCTCATAATGTTATATATTTTCCTGACCTAATATTTTAGAAGTCAGTTATGTCAATACCTTTTACAGTTTTCATATTGTGTGCCCTTTCCAGGGTGAAATTCTCTTCTTTATTCTTAAGGAAGAATGTTTAGAATTCCATAGAATATAATGTTGTACAACATGTTTACTTATTACTGGTTGTTTTACTACAATAGTAAAGGGTTGCTTTACTAGAATAGAAAGGGTTACTAGAATAATGTGTTTATTAATTTTTATTGTGATTTACAGTTGATGGTCTTTCAGAACATATTATGCAATATAACTGACATTTACTTGTTAATGTTATAAAATGCCTGTTTTTCATGGATATTGATGCTTTTATAACAGGTAATTCAGGAAAATACTTCATTTTTTAAATATCCCTAGTAAATTCTTTATTTTCTCAGTGCTGTATTTGTTTTGCAATTCTAAACTGCCATTTATTTAGGTTACTTGTTAGATAAGCTTGTTTTGGATTATTTACCATTATATTACTTATTTTAAGTATTAATTTATATACAGTAATGATGTAGATACTGTATGTAGATTATGTATAATAAGTATGTGGAAAATATGTCTAATATGTTTCTCGTCAGTTACAGTCAGTATGTATATACTTTGGGTTCATGGTCATGAGATTAGCCACTTTTTAAGAGCTAACATAAGTTTACACAACCTGAGTGTTTTTGTCCTACAGTGTCTGAAATGAGGCTATGCTAAAATCAGTTTGAATTTCATGTGAACATACTTTATTTATTAAAGAATCCTATTTCTTTACTGTTTCTCAAAATTTGAAGATCATGGTTGGGAAGTTTCATAACTACATTCAGTGTAAGTGTTATTTTTGGTATAATATGTTTTCAACATAAAATATTTATGAATTATAATTAATAACATACCTATGATTTTTTTGTATTTTGTAG
Seq C2 exon
ATATCTCTCCCATACATATTATCAAGAAATTACAATCAAAGGAGAACACTAACTCAACAGATACACTCCAAACAGTGATTTTGGGAAGACATGAAAGCCATGGAGTCCAAGATTTTTACTTAAGGGAAATACGAGGCAATACGCTTGAGTTTGAGTGTCAGTGGAAAGATGACGAAAGAAATTACAAAGGAGTGCTTGTAATCCATAATGAAAAGCTCACTGATAGAAAAGATCAACGTGGTAGAAGCAATGCAGGAAACAATGCAATTGAAAATAAACTTGCGTTAAGCTTTCAGGATGAATTGCAGATATTTCGAATGGAAAGGAAAATTTTTGAATGTAATCAAGTTGAGAATGTTATCAACAATAGTTCCTCAATTTCAGCTCTCCAAAGAATTCCTCCGAGTGTTCAAACCAACACTTCTAACATGTATGGGAATAATTTTATCCATTCTTCAATACTGACAAAAGACCATAAAGCGCATAGGGAAAAACCTTACAGGTGTAATGACTGTGACAAAACCTTTACTCATGTCTCACACCTCACTAAACATCAGGTAGTCCATACAGGAGAGAGGCCATACAAATGTGATACATGTGGCAAGGACTTCAGTCAGAGTTCGAACCTTGCAACTCATCGGAGAATTCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAGGATTTTAATAGAAAATCAAACCTTGAAACTCATCAGAGAATTCATACTGGAGAGAAACCATACAAATGTAATGTGTGTGGCAAAGCCTTTAGGGTGTGTTCAAGCCTCAGGAGCCATCAAGTAATCCATACTGGAGAGAAGGATTACCATTGTAGTAAATGCAACAAGGCTTTTTCCCGTAATTCCAAGCTTCTAAAACATCAAAGAATTCATACTCGAGGGCAGCCCTACAAATGTGATGCATGTGACAAAGCCTTTATTTTGCGTTCAAGCCTAATCAACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030470:ENSBTAT00000016857:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.153
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=PU(19.2=1.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development