HsaINT0187370 @ hg19
Intron Retention
Gene
ENSG00000198464 | ZNF480
Description
zinc finger protein 480 [Source:HGNC Symbol;Acc:23305]
Coordinates
chr19:52817406-52819215:+
Coord C1 exon
chr19:52817406-52817532
Coord A exon
chr19:52817533-52819086
Coord C2 exon
chr19:52819087-52819215
Length
1554 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
ATTTTTTTTTTTACAAACAGGAA
3' ss Score
9.91
Exon sequences
Seq C1 exon
GGACACTTAACATTCAGGGACGTGGCCATAGAATTCTCTCAGGCGGAGTGGAAATGCCTGGACCCTGCACAGAGGGCTTTATACAAGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGG
Seq A exon
GTGAGGATCATGCCCCTGCAGAAGCCGGGATCTGCCCTTGGTTATTTCAGCATTTTCCCTTGTGTGCCTCCTGGGAGCCCCTGCATTGTTTGACTGACATTAAGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTTTGGTGAGCCGAGATCACGTCATTGCCAGCCTGCCAACAGAGTGAAACTCCGTCCCAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAACCCTTATTGACTCAGGCTGGGATCCGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGAGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGTGGGAGCCTGTAATCCCAGCTACTTGGAAGGCTGAGTCAGGAGAATCTCTTGAACCCGGGAGGTGAAGGTTGCAGTGAGCCGAGAATGCACCATTGCACTCCAGCCTGGGTAACAAGAGTGAAACTCCGTCTCATTAAAAAAACAAACAAACAAACAAAAAACTAAAAACCTTGTTGACTCAGAAATGAAAAGCTCCATAGTGTTTTCTGGAGTTGAAATGTCCTTTTTCTTCAGATGTTCTGTCCCCTTCATTATACATCATTGGGTGGTACCAGGGCGGAAGTATGCATAAAACCTTTTTTGTTTGTTTTTGAGATTGAGTCTTGCTCTGTTGCCCTGGCTGGAGGGCACGTGATCTTGGCTTACTGCAGCCTCTGCCTCCCAGGCTTAAGCAATTCGCCTTAGCCTCCCTAGTAACTGGGATTACAGGCACGTGCCACCACACCTGGCTAATTTTTCTATATTTCATTTTTACAATGTTGGCCAGGCTGGTCTCAAAGTCCTGGGCTCAAGCAATCCACTTGCCTCAGCCTCCCGAAGTGCTGGGATTACAGGCATGAGCCCCCGCACCCAGCTGCATAAAACCTTATGGCAAACTTTTCAGATACCCACTTCCCTGTTTTCTACTCCTGTGCTTTGTTTTATGTTTTGTTTTTTTTTTTTGAGACAGAGTGTTTCACTCTTGGAGGCTGGAGTGCAATGGCGCGATCTTGGCTCACTGCAACCTCCGCCTCCTGGGGTCAAATGATTCTCCTGCCTTAACTGCTCGAGTAGCTGGGATTAGAGGCATGTGCCACCATGCTTGGCTAATTTTTTTTTTGTATTTTTAGTAGAGACCGAGTTTCTCTGTGTTGGTCAGGCTGATCTCGAACTCCCGACCTCAGGTGATCCACCCGTCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACGCCCAGCCTCTACTCCTGTGCTTTATACTCAGTAGTTCTTGGAAAGGGGCTTGATGTCTGCATGTTATAATATTCCCTAAGCATTCAGAAGGAGGCAGTCTATGGATGAATTTGTGAAATATTATTCTTGATTCATTTGTGATATCCTGTCTCCTTCCTACACATAGGGCTTGGATTTTGGAGATGCTACAGCACATTTTGATTTTTTTTTTTACAAACAG
Seq C2 exon
GAATCTCTCTTCCTGACCTGAATATTAACTCCATGTTGGAGCAAAGGAGGGAGCCCTGGTCTGGTGAGAGTGAAGTGAAAATAGCAAAAAATTCAGATGGGAGGGAGTGCATCAAAGGTGTGAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198464-ZNF480:NM_144684:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.155
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTTAACATTCAGGGACGTGG
R:
CTGTGTTCACACCTTTGATGCAC
Band lengths:
254-1808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)