HsaEX0073503 @ hg38
Exon Skipping
Gene
ENSG00000197937 | ZNF347
Description
zinc finger protein 347 [Source:HGNC Symbol;Acc:HGNC:16447]
Coordinates
chr19:53134937-53153793:-
Coord C1 exon
chr19:53153733-53153793
Coord A exon
chr19:53148681-53148809
Coord C2 exon
chr19:53134937-53142556
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCTTTCTTTTCATAAGCAGGAA
3' ss Score
7.78
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAAGAACCCTTGAAGAAGAGGAAGAGGAAAGAAAGACAAGTCAGGCATGGCTCTCACCCAG
Seq A exon
GAATCTCTTGTTTTGACCTCAGTATTATCTCTATGTTGGAGCAAGGGAAGGAGCCTTTCACTTTGGAGAGCCAAGTACAAATAGCAGGAAACCCAGATGGATGGGAATGGATCAAAGCTGTGATCACAG
Seq C2 exon
CTCTCTCTTCCGAATTTGTAATGAAAGATTTACTACACAAAGGGAAGAGTAATACAGGAGAAGTATTCCAAACAGTGATGTTGGAAAGACAGGAAAGCCAAGACATTGAAGGATGTTCCTTCAGGGAAGTCCAGAAAAATACACATGGCCTTGAGTATCAATGCAGAGATGCTGAAGGAAATTACAAAGGAGTGCTTTTGACCCAAGAAGGCAATCTCACTCATGGAAGAGATGAACATGATAAAAGAGATGCAAGAAACAAGCTTATTAAAAATCAGCTTGGATTAAGCCTTCAGTCACATCTGCCTGAACTGCAGCTTTTTCAATATGAAGGGAAAATTTATGAATGTAATCAGGTTGAGAAGTCTTTCAACAATAATTCCTCAGTTTCACCACCTCAACAAATGCCTTATAATGTCAAAACCCACATTTCTAAGAAATATCTCAAAGATTTTATCTCTTCTTTATTACTCACACAGGGGCAAAAAGCAAATAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197937_MULTIEX1-3/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.040 C2=0.132
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.3)
Main Skipping Isoform:
ENST00000334197fB8119
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAAGTCAGGCATGGCTC
R:
TGCCTTCTTGGGTCAAAAGCA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development