MmuEX6075432 @ mm9

Exon Skipping

Gene

ENSMUSG00000067942 | Zfp160

Description

zinc finger protein 160 [Source:MGI Symbol;Acc:MGI:108187]

Coordinates

chr17:21157036-21165816:+

Coord C1 exon

chr17:21157036-21157162

Coord A exon

chr17:21157670-21157798

Coord C2 exon

chr17:21162425-21165816

Length

129 bp

Sequences

Splice sites

3' ss Seq

TACCATCTTTTTATAAACAGGAG

3' ss Score

8.55

5' ss Seq

CAGGTAAGC

5' ss Score

9.88

Exon sequences

Seq C1 exon

GGACAGTTGTCATTCAGTGATGTAGCCATAGAGTTCTCTCAAGAGGAATGGGAATGCCTAGACCATGCACAGAGAGCTTTGCACAGGGATGTCATGTTGGAGAATTACAGCAACCTGCTCTCCCTGG

Seq A exon

GAGTCACACTTCCAAATTTGAATGCTATGTCTAAGTTGGAACAATACAAAGGGCCCTGGACTGTGGAGAGTGAGGCAATAAGAACCAGAAAATCAAATGGAAAGGAATATATCAGAGCTATGAGTGCAG

Seq C2 exon

AAAATATTAATGGTAATGAAGCTAAGTCCATCAGCAGTGGTTCTTCAATTTTGTCATCTGACAAAATTCTTGCTAGTGGTGACAAAGCACCTGTTGTTCATGAATATGATGTTTATTCTTCACTACGTATAAAAGGACAGAAAGCCACCATTAAGGGGAAACCTTATCAATGTAAAGAGTGTGACAAAGTCTTCAGTTATACTTCTTCTTTAGCATATCATCGGCAGATTCATACTGGAGAAAAACTTTACAAGTGTCTTGAGTGTGGTAAGGCTTTTTTTCGACGTTCTTATCTTTTGGTACATGAGAGGCATCATACTGGAGCGAAACCTTACAAATGTAATGAATGTGGCAAGGTGTTCAGTCAGAATTCACACCTTAAGAGTCATCGAAGAATCCATACTGGTGAGAAACCATTCAAGTGCAATCATTGTGGCAAAGCCTTTAGTGTTCGTTCAAACCTAACTCACCATCAGGTAATCCATACTGGAGATAAACCT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000067942-'7-5,'7-3,8-5=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.077

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF127602=Zn_Tnp_IS1595=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=4.6),PF0013017=C1_1=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0013017=C1_1=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0013017=C1_1=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0013017=C1_1=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)

Main Inclusion Isoform:

ENSMUSP00000086191