RnoEX6001097 @ rn6

Exon Skipping

Gene

ENSRNOG00000059492 | LOC100365363

Description

vomeronasal 1 receptor, F4-like [Source:RGD Symbol;Acc:2319215]

Coordinates

chr1:60884761-60894948:+

Coord C1 exon

chr1:60884761-60884993

Coord A exon

chr1:60885535-60885663

Coord C2 exon

chr1:60890906-60894948

Length

129 bp

Sequences

Splice sites

3' ss Seq

GTTACTGTCTTTGTAAACAGGAA

3' ss Score

9.06

5' ss Seq

CAGGTAAGC

5' ss Score

9.88

Exon sequences

Seq C1 exon

GGTTTATTTTCTTTAAATTAGTTCATCCTTTTGATTTTTCACTTGTGTCACCTCTGTGTAAAGCTCTTAAATGTCCACATGGTAAAATGTGTTTGTTCCCTTTTAGGGACAGTTGACATTCAGTGATGTGGCCATAGAGTTCTCTCAAGAGGAATGGGACTGCCTAGACCATGCACAGAGGGCTTTGCACAGGGATGTCATGTTGGAGAACTACAGCAACCTGGTCTCCCTGG

Seq A exon

GAATGACACTTCAAAGTCTGAATGCTGTGTCTAAGTTGGAACAAAACAAAGGACCCTGGACCGTGGAGAGTGAGGCAATAATAACCAGAAAATCAAATGTACAGGAATATGCCATAGCTATGAATGCAG

Seq C2 exon

AAAATATTGATTGTATGGAAGCTAAGTCCATCAGCAACGGCTCTTCAATTTTGTCCTCTGACAGAATTTTTCTTAGTGGTGACAAAGCACCCTTTGTTCATGAATATGATGTTTATTCTTCACTACTTATGAAAGGACAGAAAGCAGCCATTAAGGAAAAACCTTATCAATGTAATGAATGTGACAAGGTCTTCCGTTATACTTCTTCTCTAGCATATCATCGGCAAATTCATACTGGAGAGAAACTTTACAAATGTGTTGAGTGTGGTAAGGCTTTTTTTCGACGTTCTTACCTTTTGGTACATGAGAGGCATCATTCTGGAGCGAAACCTTACAAATGTAATGAATGTGGTAAGGTCTTCAGTCAGAATTCACACCTTAAAAGTCACCGAAGAATTCATACTGGTGAGAAGCCATACAAATGTAATGATTGTGGCAAAGCCTTTAGTGTTCGTTCAAACCTAACTCACCATCTGGTAATCCATACTGGAGATAAACCT

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000059492-'0-3,'0-1,1-3=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.068

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=100.0)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0013017=C1_1=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0013017=C1_1=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0013017=C1_1=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)

Main Inclusion Isoform:

ENSRNOP00000071548