HsaEX0073089 @ hg19

Exon Skipping

Gene

ENSG00000170949 | ZNF160

Description

zinc finger protein 160 [Source:HGNC Symbol;Acc:12948]

Coordinates

chr19:53569859-53578436:-

Coord C1 exon

chr19:53578310-53578436

Coord A exon

chr19:53577393-53577521

Coord C2 exon

chr19:53569859-53573515

Length

129 bp

Sequences

Splice sites

3' ss Seq

TCCTTTCTTTTTATAAACAGGAC

3' ss Score

10.57

5' ss Seq

CAGGTAAGA

5' ss Score

10.77

Exon sequences

Seq C1 exon

GTACGGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGATCTTATACAGGGACGTGATGTTGGAGAACTACTGGAACCTTGTTTCTCTGG

Seq A exon

GACTGTGTCATTTTGATATGAATATTATCTCCATGTTGGAGGAAGGGAAAGAGCCCTGGACTGTGAAGAGCTGTGTGAAAATAGCAAGAAAACCAAGAACGCCGGAATGTGTCAAAGGCGTGGTCACAG

Seq C2 exon

ATATCCCTCCTAAATGTACAATCAAGGATTTGCTACCAAAAGAGAAGAGCAGTACAGAAGCAGTATTCCACACAGTGGTGTTGGAAAGACACGAAAGCCCTGACATTGAAGACTTTTCCTTCAAGGAACCCCAGAAAAATGTGCATGATTTTGAGTGTCAATGGAGAGATGACACAGGAAATTACAAGGGAGTGCTTATGGCCCAGAAAGAAGGTAAAAGAGATCAACGCGACAGAAGAGACATAGAAAACAAGCTTATGAACAATCAGCTTGGAGTAAGCTTTCATTCTCATCTGCCTGAACTGCAGCTATTTCAAGGTGAGGGGAAAATGTATGAATGTAATCAAGTTGAGAAGTCTACCAACAATGGTTCCTCAGTGTCACCACTTCAACAAATTCCTTCTAGTGTCCAAACCCACAGGTCTAAAAAATATCATGAACTTAACCATTTTTCATTACTCACACAAAGACGAAAAGCAAACAGTTGTGGAAAACCTTAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000170949-'8-13,'8-11,9-13

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.011 A=0.000 C2=0.155

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF054957=zf-CHY=WD(100=11.7),PF079757=C1_4=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4),PF054957=zf-CHY=WD(100=11.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF0013017=C1_1=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4),PF054957=zf-CHY=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF097235=Zn-ribbon_8=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF0013017=C1_1=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.6),PF0013017=C1_1=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.6)

Main Inclusion Isoform:

ENSP00000406201