HsaALTA0009802-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000197937 | ZNF347
Description
zinc finger protein 347 [Source:HGNC Symbol;Acc:HGNC:16447]
Coordinates
chr19:53148691-53149367:-
Coord C1 exon
chr19:53149241-53149367
Coord A exon
chr19:53148769-53148809
Coord C2 exon
chr19:53148691-53148768
Length
41 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TCCTTTCTTTTCATAAGCAGGAA
3' ss Score
7.78
Exon sequences
Seq C1 exon
GGACAGGTGACATTCAGGGATGTGGCTATAGAATTCTCTCAGGAGGAGTGGACATGCCTGGACCCCGCTCAGAGGACTTTGTACAGGGACGTGATGTTGGAGAATTATAGGAACCTGGCCTCCCTGG
Seq A exon
GAATCTCTTGTTTTGACCTCAGTATTATCTCTATGTTGGAG
Seq C2 exon
CAAGGGAAGGAGCCTTTCACTTTGGAGAGCCAAGTACAAATAGCAGGAAACCCAGATGGATGGGAATGGATCAAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197937-14-23,14-22,14-21,14-20-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGTGGACATGCCTGGA
R:
CCATCCATCTGGGTTTCCTGC
Band lengths:
148-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains