MmuINT0007572 @ mm9
Intron Retention
Gene
ENSMUSG00000050296 | Abca12
Description
ATP-binding cassette, sub-family A (ABC1), member 12 [Source:MGI Symbol;Acc:MGI:2676312]
Coordinates
chr1:71340175-71341630:-
Coord C1 exon
chr1:71341301-71341630
Coord A exon
chr1:71340245-71341300
Coord C2 exon
chr1:71340175-71340244
Length
1056 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
ACTGTTCATTTTCTTCTCAGAGC
3' ss Score
9.75
Exon sequences
Seq C1 exon
TACATGAAGATGATGGGTGTCAACTCCTGCAGCCATTTCTTTGCCTGGCTTATAGAGAGTATTGGGTTCTTGCTGGTCACCATTGCAATCCTCATCGTTATCCTCAAGTTTGGCAATATTCTTCCCAAGACAAACGGCTTCATTTTGTTCCTGTACTTCTCAGACTACAGCTTCTCAGTGATTGCCATGAGCTATCTCATCAGTGTCTTCTTCAACAACACCAACATTGCAGCTCTGATTGGAAGCCTCATCTATGTCATCGCCTTTTTCCCATTTATTGTTCTGGTTACAGTTGAGGATGAGCTGAGCTACGTTATTAAAGTATTCATG
Seq A exon
GTAAGTCAACCGGCTGGAGTGCACCCTTGTGTGACATAAATACTTTCCTCCCTTAGTTCACGAATACCCTCAAGTTGAAAGTTCATTTATACAATTAAAATATAATGTAATAGCAAAATATACTTAACTCTTCTAATGGTTTTTCTAATTGCTCTCTACTCCGAAAGGAAACATCCCCCTCCCACACCACACAGCCTCTAGAACCATTAGTGATGCTGTTAGGCTCTGGTTCAGTTAAACATATTACCTGCCATGTTTTTAGAGCTCAAAAAGAATTCTGACTTCTCTGGTTCGAATCCTCAAACATCTCAGAAATTCTTGCGTAAGAACCAGTCTCATGTATAAAAAAGCCAGCATCATTTTTATGAGGAGCACATAGTCAGTTGGAATAGTGATGGAGGCATTGATAGCCTATACTCAAATGTGAATTCTCTTCTGCTTTTTCCTACCTCAGAAGTACTAAATTGAGAACTAAGATGACTGAATTTAATCTTCAGAAAGCAGATCGTTTCCTGTCATATTAAGGCTTTTCTGTTCATGGACATAGATCTTGATGAATAACCTTTATTCAACACTGACTGCTCTAGGTTTAAACAAAACTTAAATTTATAATTGGTAGTGATTATCAATATTCAACCAATAAATATTTTAGTATATTCTCATTTAAGACTGTATCACCTGAAATAAATTTCAGAACACTTTCAGGTCCTGATATCATTTAATTTGAATCTTCACACTCTATTACTCTGTAATTTCCTACCTTATAAATTTCTGAGCAACATTTAATAAGCTTAGGCATATATTTTGGATTGTTAAAAGGCATGCTCCAAGTATTTCCTCTTTCTCTCTCTCTCTTTCTGTCTCTGTCTCTGCCCTCCTCTCTCTCTGTCTCTCTGTCTCTCTCTCATTGTAGTATTTTTAGCAAGGGACTTAAGTATTTTAAAATAGACTTAGAGAGTGAGCTCTGTCTTTCCTATATGTCTAACGGGTTGAGCATTTTGAGGCCTTCCAGGTGAGATGTGCTGGAACAATCACCACTGTTCATTTTCTTCTCAG
Seq C2 exon
AGCCTGCTGTCCCCGACAGCATTCAGCTATGCAAGCCAATATATTGCACGGTATGAAGAACAAGGCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050296-Abca12:NM_175210:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(28.2=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATTTCTTTGCCTGGCTT
R:
ACCGTGCAATATATTGGCTTGC
Band lengths:
352-1408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: