MmuINT0007600 @ mm9
Intron Retention
Gene
ENSMUSG00000050296 | Abca12
Description
ATP-binding cassette, sub-family A (ABC1), member 12 [Source:MGI Symbol;Acc:MGI:2676312]
Coordinates
chr1:71395591-71398379:-
Coord C1 exon
chr1:71398282-71398379
Coord A exon
chr1:71395777-71398281
Coord C2 exon
chr1:71395591-71395776
Length
2505 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
ATTCTCTCACATACTTTTAGCTG
3' ss Score
6.58
Exon sequences
Seq C1 exon
CCACAGTACCTCCAAGACCAAGCTATGATTTGGAAGGAACAGGCACAGAAAATTTCAATGGTAGCCAATTGCTTACACGCATCCTTGGTTTGGAAAAG
Seq A exon
GTAACTTCATTTATTTTTGCAATGGACAAACATATTTTATATTGGTGGAGGTATCTCCCAAGCAGGAAGAGGTTTACAGAATATCTCCAATTTAAGTACTATCTCAGGCAGGTTCTTTTCTTGGACACTTTTCAATCATAGCTTAATTTTAATTCATTGCAAATTCCTTAAGGTCTTGGGCATTTATTTACTGCCCTGGTAAGTTCCTTAATTGAACTTACAGTTTTGACTTACTAAGAAATCATGTAGTATTTGATGTGATCTTTCAATTTTATGAAGCAAGGAAATAAAAAACGAAGCTGTAAAACTGCACCTGATGCTTCATCCACACTAATACCTTTGGGCAAATTAGAGCTACAGAAATCCCCCCTAAGTAGAAATATTTTTTTGTCCTTGAAATATTTTTTCCTTAGCATATGGTAGAGAGTTTACCTATGGAGTTTTCTGTTTCCCAGAGATAAACTATTTTATGATTGCTCAGATTTAAAGATAATAAACACACTTTTATAAGAGGTATGAGCTGGCAGTCTATAAGCTCTCTTTTCTCCAGTCTCTGTCTCTGTCTCTGCCTCTGTCTCTCTCTGAGTATGTGTGTGTATAGAAGATGGATTTGAATGGCTTTAAAGAACAACAGTCACTCTGCAGGTAACTACATTCTCTATTTCTTGCTATCTTCCAGCCACCTTGGAACATATATTGATGCTATTGTGGATTAAATATGGCTTACCTGCATCATCTTGCTTTTCTCTCCCCATCTCGTCATCTCTCCCTGTTTCTCTCTCACACACTTTATCTATGTAGCAGGCATTTTTCCCATTTGTATCATAAGACATGCCCCTGACATTTATCCCCATTCCAGTAATCCTAAGCACTAATGCTCACTGTGAGTTTATTACTGACTCTTGGTTTACCATTGTACGTGACAGAGGCATCTCATTGAACTGAGTCATTTCCTATCAAACCAGATCATATAAATACGCAGAAATAGCACAATAAATGATTTTATGGAAAGGCACCATAATCAATAATTCTGCAGACCTTTCCTGTGCTGGTTGTGATAGAAGACTTTCTTACTATATTATATATAATCTAGACATTATAGTATGTGTATTCTAGAAATTGAACATTGATATTCTGTCACATTCATAATTGCCAAGGCTCCCTTGGTGACTTGGAGTTCCTAAGCATTTCCAATTAGTTCCAGCCTAAGTCCTCCCCTCACTGGGTCACAAGGAAAATCTGTACTATTCCATGATGTTTTCTTCTTGCTTCTTAGGACTTTGTATTGGATCAGACAATTTCTGTAATGAATAGAATAGAAACACTGTTCTCAAAATTACTGCTTCACTCTATTGAAACTTCCAAGGTCTCTGTTTCATATGGGATAAGAGTTTAGAATTTTGTGAGACAGCACAAAGCCGCATATTCCAGAGATGGAAGCTCCAAGTGAATTTTGTATATACGGACACATATTTTTCAAGTAGTTGGAACAAGGCAAGGATGTAAGAATTAGGATGACATATTGATGCCCGTGTCAGCAATCTCTCTAATTCCTTTCTTTCTCTTTGCTGCTTTCTGCAACCCTTGCAGGAATGAGTAGAGAAATCACTTCAGGGTGAGTTTATGTGTAATGTTAGATCAGGGCTGTGGATGAATGACCAGAAAACCTAGCACTTCCAATGCCGCCCAGATAAGTGGATCCTGTCTTGTTCCATTATGCTTAGAAGTTAAGTTGCTGGGGAAGAGAGTATAAATTTCATGATGTAAACTTAAGGGGAGAATGGAGTTAGCCATTACCTCATAGGGTCATATGAGTTAGCTACTGGAAGGAAACCCTTGAGTATTACAATTAAATGCAATTAACATTGCAAACACATAAACTATTATGGTGATCAATATCGTGGCTGGAGGAGTGTTTCTGTGGTTCTTCTGTTCTATGGAAACCATTGGCCAGTTACAATGATTCCATTAGGAAAGTTATTTCCCATTATTGCTTGCTGTAATTAGCTTGACTTATCTATTTGAATAACATTTTCATATTTTTCCTTTTTTATCTTTCTGCACATGAGATTGAAAGGAAATGTAAGCCATCTGCCCACTTTCGGTCCTAAGAAAGACTATGACCAATTTTATAAGAAACAACACAGAGTTAACACACTTGAACTTATGCCACACAAAACGCAGGAAAAATTAATATGTTTTTTTCTTCACAAAGATTTTGCCAGAAAACATTGGGTGTGTTTATGTTCTCTGGTCAAACATAAGAAGTAGATTCAGTTATATAAATGAAATGTGAACCATTCAAATAAAACCAGGGCAAGAGTGTATACCTTCATTCATAGTCTTCCTCTGCAGCTCCACACAGGCAAAATTGTGTGTTATTGTTTCAAAAGGCAGAACTTTAAAGATCGCTGTTGGGAAGATAGGCCAGTGACCTTAAAGATGAAAATCTTTTCCTTTCTATGTTTTCTAATATCACTTCCCAATTCTCTCACATACTTTTAG
Seq C2 exon
CTGCTGAAGCAAAATTCAACTCCAGAAGACATACGAAGAGAGCTGTGTGAGAGCTACCCTGGGTACACTGCGGACTATGCCTTCTCTTGGGTCACCCTAGGAAAAAACGTTTTTAACAAATTTTGCCTTTCGAACATGACACTTTTAGAGTCTTCACTCCAGGAACTAAAATATCAAGTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050296-Abca12:NM_175210:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146371=FNIP_M=PU(24.8=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: