MmuINT0007814 @ mm10
Intron Retention
Gene
ENSMUSG00000026944 | Abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:MGI Symbol;Acc:MGI:99606]
Coordinates
chr2:25444070-25444440:+
Coord C1 exon
chr2:25444070-25444244
Coord A exon
chr2:25444245-25444324
Coord C2 exon
chr2:25444325-25444440
Length
80 bp
Sequences
Splice sites
5' ss Seq
ATGGTGTGC
5' ss Score
3.53
3' ss Seq
CTCCACCTTCACCTTTGCAGCTC
3' ss Score
8.58
Exon sequences
Seq C1 exon
ACTGCAGGGCACAGATGTGGTCATCGCCATCTTCATCATTGTGGCCATGTCCTTCGTGCCAGCCAGCTTTGTGGTCTTCCTTGTGGCAGAGAAATCCACCAAGGCCAAACACCTGCAGTTCGTCAGCGGGTGCAACCCTGTCATCTACTGGCTGGCCAACTACGTGTGGGACATG
Seq A exon
GTGTGCCCCCGCATGGTCCCTCCCTGTCCCTGACTCCCATCCCTACGCCCGGGTCTCATCCTCCACCTTCACCTTTGCAG
Seq C2 exon
CTCAATTACCTGGTCCCAGCCACCTGCTGCGTGATCATCCTCTTTGTCTTTGACTTACCTGCCTACACATCACCCACCAACTTCCCCGCGGTGCTCTCCTTGTTCCTGCTCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026944:ENSMUST00000102919:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.0=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAACACCTGCAGTTCGTCA
R:
GAGCAGGAACAAGGAGAGCAC
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types