RnoINT0010202 @ rn6
Intron Retention
Gene
ENSRNOG00000014268 | Abca2
Description
ATP binding cassette subfamily A member 2 [Source:RGD Symbol;Acc:620238]
Coordinates
chr3:2664434-2664804:+
Coord C1 exon
chr3:2664434-2664608
Coord A exon
chr3:2664609-2664688
Coord C2 exon
chr3:2664689-2664804
Length
80 bp
Sequences
Splice sites
5' ss Seq
ATGGTGTGC
5' ss Score
3.53
3' ss Seq
CTCCGCCTTCGCCTTTGCAGCTC
3' ss Score
10.95
Exon sequences
Seq C1 exon
ACTGCAGGGCACAGACGTGGTCATCGCCATCTTCATCATTGTGGCCATGTCCTTCGTGCCGGCCAGCTTCGTGGTCTTCCTTGTGGCCGAGAAATCCACCAAGGCCAAACACCTGCAGTTCGTCAGCGGGTGCAACCCTGTCATCTACTGGCTAGCCAACTACGTGTGGGACATG
Seq A exon
GTGTGCCCCCGCATGGTCCCCTCCTGTCCCTGACTCCCATCCGCACGCCTGGGTCTCACCCTCCGCCTTCGCCTTTGCAG
Seq C2 exon
CTCAATTACCTGGTCCCGGCCACCTGCTGCATCATCATCCTCTTCGTGTTTGACTTGCCGGCCTACACGTCACCCACCAACTTCCCCGCGGTGCTCTCCTTGTTCCTGCTCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014268:ENSRNOT00000020339:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(20.0=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAACACCTGCAGTTCGTCA
R:
GAGCAGGAACAAGGAGAGCAC
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]