MmuINT0007834 @ mm9
Intron Retention
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24488991-24498034:+
Coord C1 exon
chr17:24488991-24489196
Coord A exon
chr17:24489197-24497832
Coord C2 exon
chr17:24497833-24498034
Length
8636 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GCACCCTTCATCTACCAAAGGTG
3' ss Score
5.43
Exon sequences
Seq C1 exon
GCCCCCCCACCCCCTCCAGGAGCCGGAGCTTCCTGGTGCGTTCTTCCACCCGCGCCTGTCGCAGGCGCCTCCTCTCTGCCCCGCCGCCTCAGTTGTCAGCTTCGGCCGCAACCGCCCCAGCAAGGCTGGAGCAGGACCGGGAGTCTAAGGGAGGGAACCTGGCGAGAGAGCTGCGCAGACCGCCGCCACCCTGGCGCTGAGGGTCG
Seq A exon
GTGAGTGTCACTAGGACTTGTCACTCGCGCGCTAGCTCGGGGCTCTGAGATTTCCCGTCCTTGCCCGGGTCTCCACTCTGCCAGCGGGCAGCGCCCCAACCTGGGGCCTCCGAGCCCCTGCCTATCGCCGGGACCTGCGGGCTCGCGGACTGACCCTTCGTATTGCTGCAGGTGTAGCTGTCTTGGCGTCCTCATGCTGGGTGTGTCCCCGCTATAGCGGGGTCGCGGGGCTCGCAGGAACCCGCACAGACCGCTGGGTCGTTACGGGGTCTATTGTGCGGGCCTGGCAGGTGGACAGACAGCCGCCGCCCTCAGGCGCTTTGCGGGCTGCGACACAGCAGGCCGGCGGAATGCTCCAGGCTCAACCGGCCAGTGCTGGTCCTGGATGGAATTCCTCCCAGTTCTTCAAGCTTCAGCATCTTCGTTTTCATGAACTTTAACGTAGGGTTCAAGGGATGCTTTGATAGGGGTTGAAGTTGGCGAAGCCCTCAATGTGCAATACAGAACTCGGAAGGGGGAACCACAGCAACTACAGCAACTGTGCTCTGGTCAAGTGTCTCGGTGTTTGGTGTTGGTGCTCAGAATGACCGACCCCGAACTTCGACTAGTTCCTGGGGGTCAGGGCTCCAGCCTGGGGGTCAGGTCCCTGGTACTGCACGCTTGAGCTTTCCCTGTGTGTGGCCCATTTGGGCTTTGTCTTAAAAGGTATTTCTGTCTGTCCCTTTGCCTCCAGGCCTGAACGGTTCTTGTATCATAAATAGGGACTTGGTGTTTGTAACGTGAGGAGCACTCAGGAAATGCTCTCCCAATGAGTGACTGGGGCTTTGTAGTAACAATGTGGAGACCCAGGCAAGGCTTAAGGAACTGAATTCTGCCCCTGTCTCCTAAGCAGCCTTATTTCATCCAGAGAGTTTTGTTTGGTGTTGCCATTTGTAAGCTTGAAAAGACTGAAACCATTTTAGAAAGCTTGCCTCGTGGGAAGTAAGAGACAGGGTGGGGAGAGGAAAAGTTGATTTTTAAAAAAATGAGTGTCATGGGAATCCCCCTCACCCACATTGGTTTGAATTGAGCCCTTGCAAACAGATAATATCTTCCTCTAGGGCAGGCGGCATTCCACCATTCTGACAGAACAGCCTTTCAGAGCATGACCAGGTAGCTGGAGTTCTTCTTAACAAGCCACTAACTTTCCCTGTTACATTGACCAGGCTGTCACATAGAAACTATTTTGACTTGGTCTTAACTGGGAAGGCCTTAGTTTGGCCTTTATGGGCTTTATGGTTTCTCCTTCAGCCCTGCTTCTGGCAATTGGCAGGGGGTTCCTTTGATACACTGAGTCTGCCTAGAGCCACATTCTAGAACTCTCAGGTACGTTCATCAGTCTTCTAATGCGCAAGGCTCCAGGCATGATTCTGAGTCACTAGATGATCCCTGCCCGTAGAGATCTTCAAATGGCACTAATTTACTCACAAGAAAGTGGCTTCAATCAGAAGCAGGCCTGGCCAAATGGGTCAGTGAATTAAGGTGTCTAACAATCAAACCCGACAGGTTGAGTTAGATCCCAGTGACTCACGAGATAACAGAGGGCCAGCTCCAGCAAGTCGCCCTTGACCTCCACACAGACACCATGGTACATGCATGCCCCCCACCACAGCACAGAGAAATAAATACCGTGTTTGGTTTTTATTAAAGAATGGGCTAAGTGGTACAGGACACATCCAGAATAGATGCCACCCGTGTCTAAAGGAGTAGGAGAGCTGAACTGAGAATGCAAGATAGAGTTGTTCCAGAGAAATGTTCATGTGCCCAGCCAGAGCCTACAGTCTTCATGGGTAGGCCTCAGACTGAAGTTTCTATCTGAAAACACCTCTAGAAGGTTCTGCTCTGCAGTTAAGATGAAGAACTTCTCCTTATCAGAGGCAGCATTCACAGGGCCTGGCTCTGAAGTAGGCTAGGAAATGATAGGGTCTCATCAGTTAGAGCAGTGTGTTGGATGATACTCTCAACAGACTGACGTGGTGAAGGCCCATTCTGTGTGTGGAGTGAAAGGCCTGTGGCCCATTCCTGCATCAGTGCCATTCCCTGGGAATAGCACAAGGCCTGGCGTCAACAGGCCAGTGGTCACCTTTGCAGAAGCTGTAATGAGCTCCTTGCTGCTGCACTTGTTACTGAACATCCATGGTTACCTCTCTGGGGACGCCTGTTGCTTCATGACCTCACTCCCCATGCCTAGGAGGGCAGAAAAGCTGGCTATCCAGGGAATGGGACCGGGGCTGTAGCATGGGAATTAGGCAGGAAAGCAAGCAACAGCACGCATTTTGTAGAATTCTTTTTGTAGAGCCTGCTTTGGGACACATCTTTCGCCTAAAATACACCTTGCTGATTCTTACCAAGAGCTTCTAAGGAGACCCACTGTTTTCAGCTCTGGATAAAGCAGGCAACGATGAGTTCCAGAAATTGCACTTCTCTACCTGGGCCTGCAGAATGGATCACCCAGTTTTAGACCTGGCTTCCTCGGGCTCTAGAACAGAAGCTGTGGTTTGCAGGCTGGGCTCACCCAAGCCACATAAAGGCCACTGTGTAAACAGGTCATCCCGGTGCTTCCTCTTGTGTGCTGCTGTGTAGAAAAGAGTTTGAGAGTGTCCGTGTGTGTCTGTGTGTGTGTCCGTGAGAGTGTGTGTGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCATCTGATAGTGAATCCTGACAAATGAATCTAGAAACATAGATGAGTATGGACCTTTTAAAGAGACATGAGGTGAGGCCCTGTGATAGTGACACAGACCTTTAATCCCAGCACTCAGGAGGCAGAGGTAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGTCAGCCAGGGCTACATAGAGAAACCCTGTCTCAAACACACAAGAGAGATAAGAGGTAAAGTTAACATGATTAAAATCTTCCAACATTATTAATAAGACAAAGAATTATAGCATAAACAAGCCCTGTACATTGAAAGCTCTGAGGTCAGGCTCATGTGTCCCTAGCATTTGAAACCTGGTTCTAGGTCTGTCTGTTTCAGAAACCAACTGCTGTTGAGTGTACAAATAAACAGGACACACCTGCGTGGGCACAGACCTGCGCTTGGGTCTGAGCTCATTTACGTGCCATGCAAATACTCTGGGTGGATTCCGGCAGGAAAAAGGAAAAGCACAAATTCTGGCCTTGAATGGTTTTTGGCCTAGATCTGCAGATGTGACACTCAGATAGCACCCTTGGTAGCGGAATATAATTATTAACAATCTTATGCTTGTCAGCTTTGAACATTGATTAACTTCACACGCCAACTGAAGCTTCCCCTCTCTCTTCTCCCAGTCCCTTCCTCCCCAGACATGCCGCCCCCACCCCTGCCGGCCGCCCCTCCTCCCTTTCCCTTCAGAACAGGGGAAGCCGTCCTTGGATATCAAGCAGTCTTGGAATACTAAGTTGCAGTAAAACTAGGTGTGTCTTCTCCTACTGTGGCTAGACAAGGCTGCCCAGTTAGAGGAAAGGGATCTAAAGGCAGGCAACAGAGTCAGAGCCCTTACTTCTGCTGTTAGAGGGTACCACATGAAGACCAAACTACACAGCTGTAATGTATGTGCAGAGGGCCTACGTCAGGCCCACGCAGGCTCCCTGGTTGGCAGTTAATCTCTGTGAGCCCCTATAGACCCAGGTTAGTTGATTCTGTGGGTCTTGTGATGCTGCTTATCAGCTTTTTGTTGCTGTTGTAAATACTTGAGGCAGTTTTTATCTAAAAGGCGTATTTTGGCTCGTAGTCTTAAAGGTCTCAGCCCATGACCAGTTGGCCCGTAGCTTTGAAGCTTAGTAAGGTAGCACACAGTGGTGAGGGACCTGGAGCAGATGAAAGCTACAGACACCATGGTTGGATCCCTAGAGTTCTCAAAGGAGTTACAGCAGTGTGAGACCTCCTATCAGGCTCTCGCCTATTAACATTTCTACCAATAGTACCAAGCGAGGGACTCTGCCTTTAACATATGAGTCTTTAGAGGACACTTGAGATACTAACCATAGCTCATCGATGTTCAGACATTCTCACTAGTATGCTGGGTTTGGCATGGATTGTTTGAAAGCTCTAATTCTCATGCCTTGTTACCTTTTCCTTGAGTATGGGGGTTTGGTGAGGGAGAGATTTTTTTTTCAAGGAGGATGTGTCCATAGATTTGTATTTGTGTGTGTGTGTGGTATGTATGGTTGGGGTGTGTGTCTTTGTTTGTGTTTGTATGTGTGGTGTGGGTGTGTAGTGTGTGTCTGTGTGTGTAGTATGTGTGTGTGTGGTGCAGAGGTGTATGTGTATAGTATGTGGGTAGGGGTGGAGGGTGGTGGTTGGGGGGTGTGTGTGGTGTGTGTAGTATAGTGCGTGTATGGTATGGGCGTGTGGTTGGTGTGTATATGTAGTGTGTATATGTGTAGTATGTGTATGTTTGTAGTGTGTGGGGTGGTGGTGGTGTGTGTGAGGTGTGTGTGGGGGGGTGTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGCCAGAGGTCAACTGTGGTGTTTTCTTCTATTGCTTGCTACCTCATTTTTTGAGACAGGACCGTGACTGGACCTGCACCTCACTAGTGTGGCTGTCTTTATGCCCCCATCCTCCATTGGTTTCCACTCCAGCACTGGGTTATGGACACCCATTCTCGTGTACAGCTTTTTGCGTGGGTGCGTGGGTTCCGAACTGAGGTCCTTCTGTTTATGTAACAGGCAGTTTACCCAGTGACATCTCCTCAGCCTGAATATGTTTATACCTTTTTTAAAGATTTGTTTTTATTTTCCTTGTATGAATGTTTGTCTATGTGTATACATGTGCATCATGTGTACCCGTGGTAGCCAGAACCTGCATCAGCCCACCTAGAACCAGAGTTACAGAACACTGTGAGCTGCCACATGGATGCTGGGAACCTAACCTGGTCCTTTGCAAAAGTAGTCAGTGCTCCTGGCTGCAGAATCAGCTCTCTGGCCCCTATTTTTTTTAAAGGCTATTTCACATATTACTTTCACACAGTTATTTGTTATTTTAAATTTTTTAGAGGTCTCAGGGTTTGGACATTTGATGAAAGAAAGCCACACGCCCTCCTTTTTAAATTGGCCAGTAAGTTCCGAGCTAGCTTGTGAACCCTGTGTCACCACTTCCCAGATACCTATGAAGTTTGTAAAGCTTTGGTCAGTCTCTTGTGACACATTTTATTACTTTTGTTTCTGCAGTGTGTATATGTGCCTGGGTGGGGAAATCGAAGGACAATGTCTGAGAGTCAGTTCTGTCCATCTAGCACAGGTTCCTGGGGTTTGAGCGGGTCCCCCAGGGTTGGCAGCAAGCACCTTTAAATTCCCTGCTGTCTTACCTGCTCTGTCTCTTTTTAAAAACCACATCCATGATACTTTTTTAAACGGTATCTTGAATATGGAAATGTTACACCTGGGATGCTTAAGTAAACTCCCAAGAACTGCCTGGCCACCACCCGTGCTGCAGGCCCTTCCTTAGGATGCCACGGCCATTGCCTCATGACCGGGAAAACCAGAGTGCATCCATGTATTAAATACAGCTTTTTTTCTTATTTTTAGAGAATACAAGAAAATTGCTCACTATCCCTCCACTGTGATGTACTGTCTTGTTCATTCTGCTTGGAAACAACTGGTAAGGTTCACAGATGAGGGCCAGACCCTAAAAATGTACCTTTTAGCCTCCCTTTTATTTGATTATATGTGCATCTGCACATATACTCATCTTGATTGATATATTTCATCTGCAGAGTCCATTGCATTTGACATTTTCCAATGTTTAAATCACCTCAGAAAAAAAAAAATCATGAACAAAGTCAGAAGTAGCAGCAAGCCACATATGCTTCAGAGGCTCGAATTGTACCCTGTAACTCTTTCCTGGGGCCTTATATCTGCTCGGCACAATGGGACATGATTTAATGCTACACTTCAAAGGTAGAGGCATATGGATCTAGCCTGGATCTGGAGGCTATTCTGGTGTATATAGCAAGTTCTAGGACAGCCAAGTTACATACTAGGCAGACCCTGTAATCAGCAGCAGTAGCAGCAGCGGCCTCCTCAGTCTGCTTTCATCTCTGTCTCATTGTTTGCTACTGTCAGGTACAAGTCCATGTTCAGGGTAACGGAGTGTTTCTCACAAATGTCCCTTCATTTTTCCATGATCCTCCTGTGACCCCTCAGTGATAAAGCAATTTGAGCACCATGGTCAGCCAGCCCTCTGTCTGTCTTACTTTCTGTCCTGTATACATACAGCTAATTCCTGTCTACTCCAGGATTTTATGTGGAAGCATTAGGCCATGTGGCCTTGTTGGAGGAAGTGTGTCACTGGGGGTGGGCTTTGATGGTTAAGGAGCTCAAGCCAGGCCCAGTGGCTTACTCTCTCTTCTGCTGCCTGTTGATCCAGATGTAGGACTCTTGGCTCCTTCTCCAGCACCATGTCTGCCTGTATGTCACCATGCTTCCTCCATGATGATAATGGACTAAACTTAGGCCTGTAAGCTGGCCGCAGTTAAATGCTTTCCTTTGTAAGAGTTACTATGGCCATGGTGTCTCTTCAAAGCAATGGAAACCTTGACGAAACTGTCTTGACCTAATATCCAACAATTATAAGAGAGACAAGTATTTACAGACTGTAAACTCCTTGGATTGAGAGCATTATTGCATCCATTGGTAAATCCTTACTTAGTGTGTTGTACCCATCACAGCATACATTTGGCAAATGTTCATTGAACGAATAATGCTTTGGTTTTGTATTCTAAAAAGCCACAGATTCTGTCAGCAAATATTAACTAAGTACATTCAGTGCACATTCGGTGCGTGCACACAGACCTTTGGTCCTGGCTGGCTGCTGGGAATTCTCCAGACTGATAATCAGATGTTTTCCTAAGAGCATCTTAAGTAGGGCAAAGTAGTTCCTCGTGCTGAAGGAAGGGCACCGAGAGTGGCCACCTCTGTCATACACCAATGTGAAGCACCGTGGCTGTCAGTCTCTTTGCACAACCTCACGGCCTACTCATGGCCTTATTATTCCGTCTTTTCATGGCTGTGACTTTGTGAAGGGAAGTGCACCAGTGCTGGGCACAAACCCAGGGCCTGGCACCGGCTCCCTGTCACTGTTTTTTTAGGCCCCTCAGTACCCTCAACACCAAGCTTACAAACATTTATGTGGCACCAAGAAATCAGATGACAGAGCTCAGGGAAGCTGCCATGGTGGGTAAGTGGTAGAGTTCTTGCCTGGTGTGCATGGGGCCCTGGTTTTAATCCAGGCACTGACTGGGGTTCTTCCAGCTCACTGCGAGCAGATGCACCACAGGGCTCATGGGCTGGCACAACCCTAGTCCCCAAGCTAAGAGCGACCGTGAGAAAGACCATCTTGACAGGACTCCTACAACCTGCCAACAGAGTTTTCAGAAATCAGCCCTTGCTTTATACCCATTTGATTGCCCACTTCGAATACAAGCATTGAAATACTCATTGCCTTGTGCAATATTTGATATTTTAACCAAGAACAAACAAGGCTTTGGAGCAGGGCGGTGGGGGTGGGGGGACTGCCTTCTCTTTCTGAATGTTTCCTCAGGAGCTAGCTGAGCCCTCTTCAGTTGGACATTCTCAGAGGATTCTTGTAGGGGGTGGGGAGCTAAAGTGACCCAGTGAGTCTTGCTGCTTGCCTTAGAGTCTCTGGCTCTTGTCCTCTCCCTGAGGCCAGCCTCAGATCTCAGCCACTGCCACTTCTGAGGACTCTCTGTTAAGGAGCTTTAACTTCCTTCCCTTGCATACATTGACTTTCGTAACCAGGAAGTGTTCCAGATTTTGTAATTCTAGGATCTCTTTTAGATGCCTTTGCTCAAACAGAACATGCACAAGTGCAAATATGCCTTCACTGAGACTTCAGATAAGGCTTAACGAGGACAAAGCAGTAAGCAGGGTGTTGGGGGGAAATGGGAGCAAATTAAAGCAGTGAAGAGGAGGTGGGACTGACTCTAGGGTCACATTCCAGAAGCGATACAGAAAACCGCTAGGAGGATGTTCACTGAGTCTAGAATATGGAAGATACATATTTTCTACTTTATCTATAAATGTATAATGTATCTATAATATATGTCCTATATATAAAAGATAGAGGCTTAGACAGGCTGAGGTTCAAGCATTGACACTGCTTGCTTTGCAGTTTGCTCTTGGTCAGTACTTTCCTTTGTTCTCCATCTGTCAAGGATGATAATACTCGGAGCCAGAGCCAGATTAGTAGCCATGAGCATACAATGCCAGGCACCACTGTCTCTATGCACCCTGTAGCTCTGCACCTCTCCGGTGTCAGAGCTGTTCTCTTTTAGTGGGATTCTTTACTGAGTGTCGCTGGGGGCCTTGAACCAGGCTCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGGTCCCTAAGAAACAAAGTCGGAACTCATGTGGCTCTCTTGGTTTCTAACTTGGAAAGAGGTGTTTAATGGTTATTTTTCAAATTATGCTGAAGCACCCTTCATCTACCAAAG
Seq C2 exon
GTGCCAGCACATCATGCCCGTGAGCCCCAGGTCCCTCCAGATGTCCCTGGAGATCTCAGCGTTCCTGCTCCCTAGGGCTGTTGCTTCTGTCCAGGGGACCACTGGCTCCACCCCAGGGTCATCTGTGTAGAACTGCTGACGCCAGGCGACTTCACCCGTAGCCTTGCAGTGACACCTTCAGCCAACCTTTCCTGGAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-Abca3:NM_001039581:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: