MmuINT0008015 @ mm10
Intron Retention
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:80008928-80010035:+
Coord C1 exon
chr10:80008928-80009097
Coord A exon
chr10:80009098-80009857
Coord C2 exon
chr10:80009858-80010035
Length
760 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CCCTGACCTCTCACCCACAGGAT
3' ss Score
10.61
Exon sequences
Seq C1 exon
ATCTGGTTCAACAACAAGGGCTGGCATGCCATGGTGGCCTTTGTGAACCGAGCCAACAATGGACTCCTACATGCCCTCCTACCATCTGGTCCAGTCCGCCATGCCCACAGCATCACTACACTCAACCATCCTTTGAACTTGACCAAGGAGCAGCTATCTGAAGCTACACT
Seq A exon
GTGAGTCCATCCATTTACTATCAGTGGTCATGTTGCTCAGGGGTGGTGGAGACTGGATTGGAACCTTTCTTGTGCTCAGGGCTAGTGACAAAATGTCATTCCGACAAACACTGCAAAAGCCAGGCAGCGTGGTAACCCAAACACAAACCTTTAAATATCAGCACACAAAAGGCAGAGCAGGTAGTTGAGTGTTGAGGCCAACCTGGTTTATATACACAGAGAGTTATAGGTTATATATAGACACCCTGTCTCAAGAAAAGAGTAGCCTGGTCTATAGAGCAAGTTCCAGAACAGCCAGGACACACAGAGAAACCCTGTCTAAAAAAACCAAAAACAGGCCGGGCAGTGGTGGTGCACGCCTTTAATCCCCACACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGTCTACATAGTGAGTTCCAGGACAGCCAGAGCTACACAAAGAAACCCTGTTTTGAAAAACAAACAAAACAAAACACCCTAAAAAAAACCAAAAATAGTAACAAAAACAAAACAAACAAAGAAAAGAAGAGAGACAGACAAACAAACAGAGAGAGAGAGAGACTTTCAGGCTGAGAAATATCCACACACCCTAGAACTTGTCCCACTTTTACCAAAAACCCAGACCTCACGTGCCTATACCCCCAAAATTGCCTTGCCCTCTCTCCTATGGGGGATCAGTCCCAAAGGCCTCAACACCATTACCCATTTTACTCTGAGCCACCCCTGACCTCTCACCCACAG
Seq C2 exon
GATAGCCTCCTCTGTGGATGTCCTTGTCTCCATCTGTGTGGTCTTCGCCATGTCATTTGTCCCAGCCAGCTTTACCCTGGTCCTCATAGAGGAACGCATCACCAGAGCCAAGCATCTGCAGCTGGTCAGCGGCCTGCCCCAAACCCTCTATTGGCTTGGCAACTTCCTCTGGGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722:ENSMUST00000132517:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(16.6=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACAACAAGGGCTGGCAT
R:
CATGTCCCAGAGGAAGTTGCC
Band lengths:
342-1102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types