MmuINT0008829 @ mm10
Intron Retention
Gene
ENSMUSG00000029299 | Abcg3
Description
ATP-binding cassette, sub-family G (WHITE), member 3 [Source:MGI Symbol;Acc:MGI:1351624]
Coordinates
chr5:104935057-104938268:-
Coord C1 exon
chr5:104938183-104938268
Coord A exon
chr5:104936104-104938182
Coord C2 exon
chr5:104935057-104936103
Length
2079 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGC
5' ss Score
4.2
3' ss Seq
TTGTGTATGTTGAATTACAGATG
3' ss Score
6.81
Exon sequences
Seq C1 exon
GCTCTGCTGCATAATGAATTCCTGGGACAAAACTTTTGTCCAGAACACAACACAGAAGAAGTCAGTAGATGCCATAACTATGTTAT
Seq A exon
GTAAGCTTGAGTTCTGTGTCACAATGGGGCATAGAATGTTAGTAGACTGAGAGGGACCTGACCGTCCAGGGTTAACATTCTGTCTTTTGCCAGTTCCCTGAGTCTCTCCCTGTGCACCAGAGAACATGTATCTTGACCCTACTTCTTCATGGGGTAGAGAATGTGTAGAAATGGGGTTCTTAGGGCATCTTAGAAAAGAGTTTTGGTGATTTGATAGTGGATTTGGGTTGCTTGTTTCAGAATATATGAGTTTGACATAAGCTGCTTTGGTAAGTTAGCAAAGCCGTATGGATTCTAAATTTATAGGGTATGAAACCTATGAGCTGACCCTGATAATGTCAGGGCAGCAAGGGTGAGCTTTGTCTGCCTGCATTCACGGTCCTCCCTCTGCCACACACTCTGGAAGACTTCAAGAAACAAAAGGCCAGTTTTTTTGTTTGTTTGTTTTGTTTTTTTGGTGTGTGTGTAAAATGTCCTATCAAAGAATATCCACTTAAGTGAAAGAAACAAATATTTCAGCATACTGAGAAAAATCTCTTTTTTGCTAATACTATTAAAATACAAACATATTTTTAATAAAATTAAACTTTTGAAGTTAGATTACCTTCATTTTCTGATTTTTCTCATGATTTGATTTTGATATAAAAATGAAAGAAGAATCTTCTCATATCTCTCATGGATATTCAAAATAATACTAAATAATAGCAATTCAAATTTGTGTTTTGAATTTGATGATAAGAATAGCTATTTGGAGAGAGACCTTATTTCTCACATCTGCTTTCCCATGGTGTGGCCTGGCCTCTTTCTAATACAGCTTCCTTACCAGTTTCTGGTCAGGAGGACATGGATGGGAAAGGGAAAGCAGAGGAGACCATCCACAGACTTCCTTATCACAGATTGTCCTCTCAAGAGCAAGAAATCTGCTCTTTCAGTGGATTTGTGACCTGCTACATCCTAAGAAATACAAAGGAATGGAGAGTCCCAGGGATGGAGAGGCAAGGGCAGCAATTGTAGCTGAGACAGAATTCTTTGCAGCAGCTCCTTTCCTAACCAGTGTAAGGCCCACTGAATGCAGCTGGGCTCCCACTGGTACCACAGGTTCAGTTTGTCACCAGTGCTGCTGGGGACATCCTGTAGCTGAGCAGCTGTGGTTGTCACTTCAGGCTTAGTACAGGAATAGACTCCCAGCTGAAACTTTTTTTTTTTTTTGGAGTATTGTTGGCTTTATTTTTTCTATTAGATATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTAGTTTCCCCTCCAAAAATCACCTATCCCCTTCCTTCTCCCCCTGCTCCCCAACACACCCAGTCCCATTCCTTGTCCTGGCATTCCCCTATGTTGGGGTGTAGCGCCTTCCCAGGACCAAGGGCCTCTCTTCCCATTGATGACCAAAAAATATAGAATGCTTCATGAATTTGCGTGTCATTCTTGCACAGTGGCCATGCTAATCTTCTCTGTATCATTCCAATTTTACTATATGTGCTGTTGAAGCGAGCACTAGCTGAAACTCTTAATTTCCTTTGGTTCCAGGTCTAGAATTCTATGCATCTGTTCTTGTGCATGACTGTCTCCTGGGTCAGGAAAATGCTGACAGAGCTTAGATCTCTTTGGAATGCTTGTGTCATTAGGAAGCTGGAGTTTTCTGCTTTGGGAGTAACAACAATACTTGAAACATGCTTTTGCCTGTTGAAGAGAGCAGCATTATAGATTCAGAAAGGAATGACACCGTGAAGTCTACAGAGTTGGATCATAGTGTGACTCTGTAAACTCCCCAAGTTTATTAGGCCTTCATCCTGTATGCTTTTAAGTGGATATGGCAGCTACACTTCTCTGGATAGTTTTTGAAATTAACAATGGTGACTGCCTCACATAGATTCAGATGATTGGCATAATACATAACAAAATTGTAAGCACATCATGACTACTGTGATTCAGATAAAAGGGAGAAATTTTTAATGATATGTTGAGATTATAAGTTTTTAAGGGAAGCAACAGTGAATCTACTAAATAACTTTGACATTACCTTTGTGTATGTTGAATTACAG
Seq C2 exon
ATGTACTGGTGAAGAATTCTTGATGATCCAGGGCATTGATCTCTCATCGTGGGGCTTCTGGGAGAATCACCTGGCTTTAGTTTGTACAATGATTATCCTCTTAACAATTACCTATGTGCAGTTATTACAGGTTAAGAATATTAGAAATTTTTAGTTCCTGGGGGAGGAATTTTCTACAGTTGTTTAAATAGATGTGATTCCAAACAATCCTCTGAACATTAATAATTATACTCGTGGACAAATGCCACTGAGAGGATCCCTCTTCTGTGAACTGTGTGAATGCAGAGACTTATGGCTGCTCACAGTACAAGGCTAAGGAACACGCAAATGTTTATCTCCAACAGAACACCTATAGCAAACCCTCTATAGCTTAGAGCATTGTGGAATATGGGAGAAAGAGTGCAAGAGCCAGATGATGAAAAGAAGGAATGGAAATGCAGTATTGTGGTCATGAACAGACATAGCAACCGTGGTCTGTGTCCCAACTCCACAGCTTAACTGCATAAGACTGGATCCCTCATCAGCACAGGAAGGAACAGAGGGGACCTCAATGATCCCATCCACCATTCTGCTCAGCTATTGGCTACTGGAGAGAGGCAGTCATTGATTCACATTTACACTCACATTTGAGCCTACAGGAATCCAGTGGAAAGTCTGAAACCCTTCATCACACAGACAGCCCTGTTTAAACCCTGGGGGGGTGGTCACATGATAATACCAAAGTTGTGAAGGTGAGAAAGACACTTGTAAAGAGGAGTATGTCAAGGGAGTGTAAGGGAGATGAGAGAGGTGGGACAGAGGGGGAAATGGCTGAAATGAACTATATATGTATATGGAATTGTCAATTTTTAAATAAAAATTACAAATATACAAAAATTGTAAAAAATAATAAACATTGTCATTTGTCTTATACTGTAAATCAGCAATAAATATATGTTTAAGAAATCACAAAATAATAAGTAAAAGGGTCTAAGCCCTAAACGTCTACAGAGATACTTGCTCATCCCTTGTGTTTCTGTAGTGCATAAAATAAAAACTTCAACAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029299:ENSMUST00000031239:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106119=ABC2_membrane=PD(2.8=20.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types