MmuINT0010465 @ mm9
Intron Retention
Gene
ENSMUSG00000006457 | Actn3
Description
actinin alpha 3 [Source:MGI Symbol;Acc:MGI:99678]
Coordinates
chr19:4867813-4868810:-
Coord C1 exon
chr19:4868718-4868810
Coord A exon
chr19:4868044-4868717
Coord C2 exon
chr19:4867813-4868043
Length
674 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCTTGCTCTGATCCTGGCAGCTG
3' ss Score
8.1
Exon sequences
Seq C1 exon
GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG
Seq A exon
GTGAGGCTGGGGCCGGAGGGCCCCTTCCCACTGTGCGCCTCACCTGTCCCTTACTGTATGCCTCACCTCTCCCCACTGATCCTCCCAACTCCTCTCACCTCTGACATGAGTCTGCAGAGCCCCCTTCTGGCTTTTCTCTGGCCTGCCTCCTTACCATCTCCTGCCCTCTGTCAACCAAAACTCACCTGGTCATTGCTCATTTGTTCATTGACTGGTCCCTTCCTTCCCTTGTATTTAGGCAGCCATAAGGCCTTTGTCTCCATGCCAAACTATGTTGGCCCCTGGACTCAGAGATTGTCCTGGAAGAGTGCTTCTCTAGACTATGGGAAACCCTGGATTCAAATCCCAATCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCATCCCTCCCTCCCTCCCTCCCTCTCTCTCTTCCTCTCTCTCTCTCTCTCTCTCTCTTACTCACACACACACACACACACACACACACACACACACACACACACACACATCCTATTCCTTCTCTGACTAGTAAGGACAGAGTACCCTGTTCTGTGCTCTATAGTTTTGAAAGTTCCTTCCATGTATTTGAGACCCGACCCTATGGCCACCATCTATGTGTGGAGTGGAGATGGGTGGATGAGGTCAGCTCAGAACTCTCTGCCTTGCTCTGATCCTGGCAG
Seq C2 exon
CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006457-Actn3:NM_013456:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(9.9=35.5)
A:
NA
C2:
PF0043516=Spectrin=FE(68.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACTGCTGCCAACAGGATC
R:
GAAACCAGCTTGCCCTCGG
Band lengths:
320-994
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: