BtaINT0013333 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022244 | ACTN3
Description
actinin, alpha 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:165]
Coordinates
chr29:45237068-45237826:+
Coord C1 exon
chr29:45237068-45237160
Coord A exon
chr29:45237161-45237595
Coord C2 exon
chr29:45237596-45237826
Length
435 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CCCCTGCCTGGACCCCTTAGCTA
3' ss Score
4.27
Exon sequences
Seq C1 exon
GCAGAGACAGCTGCCAACAGGATCTGCAAAGTGCTGGCCGTGAACCAGGAGAACGAGAAGCTGATGGAGGAATATGAAAAGCTGGCCAGTGAG
Seq A exon
GTAAGACAGGCCACAGAGGGCCTCCCCCTCCCGCCCTTGCTCCCCCATCCCAGCCCTGCTGTTCCTCCCATCCCAGCTGACCCCCAGCCTGGACTGCAGAGCCCACCTCTCCTCAGAGTAGCCTTGGCCTCCTCCAGCCTCCTCCTGCCATCTTTACCCACCTCCTGCCCCCTTCTGCCCATCCAGGCTCCTGCCATCCACTCATTCATCCATTCAGTCACTCATCTCTAGACAGTCTCACGGCCCTTTGCTCTGGGCCAACTATGCTGGCCCCTGGACTCAGAATATAACCATCCTGCTCCTTCTCTGACTAGTGGGGACCCCTCCTCTGCTCAAGGCCCAGCCTGTTGGCCACAGCCTGGGCGTGGCTAGAGACAGGCAAGGTGAGCAGGCCCGCTCAGCCCTCTGTGCTCTGCCCCTGCCTGGACCCCTTAG
Seq C2 exon
CTACTGGAATGGATCCGCCGGACCGTGCCGTGGCTGGAGAACCGCGTGGGCGAGCCCAGCATGAGCGCCATGCAACGCAAGCTGGAAGACTTCCGGGACTACCGGCGCCTGCACAAGCCGCCCCGCGTGCAGGAGAAGTGCCAGCTGGAGATTAACTTCAACACACTGCAGACCAAGCTGCGGCTGAGCCACCGGCCGGCCTTCATGCCATCTGAGGGCAAGCTGGTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022244:ENSBTAT00000030030:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(9.9=35.5)
A:
NA
C2:
PF0043516=Spectrin=FE(68.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACAGCTGCCAACAGGATC
R:
GAGACCAGCTTGCCCTCAGAT
Band lengths:
320-755
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]