DreINT0025734 @ danRer10
Intron Retention
Gene
ENSDARG00000001431 | actn3b
Description
actinin alpha 3b [Source:ZFIN;Acc:ZDB-GENE-030131-2040]
Coordinates
chr7:6865036-6869316:+
Coord C1 exon
chr7:6865036-6865128
Coord A exon
chr7:6865129-6869085
Coord C2 exon
chr7:6869086-6869316
Length
3957 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
ACTCCTCTATGTTCCTCTAGCTG
3' ss Score
9.77
Exon sequences
Seq C1 exon
GCTGAGACGGCTGCTAACAGGATCTGCAAGGTTCTAGCTGTGAACCAGGAGAATGAACGGCTGATGGAGGAGTATGAGAAACTGGCCAGCGAG
Seq A exon
GTGAGAAGATCTGCCTCTTAAATCTCTGATAAACATCCAGTACAGATGATTTTGGATTATTGCATGGCGTAAGATGAGCGATCAACGGGTTTATGGTTTTACATCAGGTTTTGTTCATTGAGATCATCCTTTTTTTAAGAAATGTAAGAAAATGACTAACCTATACCATAAAATAACAAAGGAGATACAGATAAAGACAAAATTATTATCTTAAAGTCTTAAGGCTGATTTTTACTTCTGCGTCAAGAGCACGCATATCAACTTCCAGTTATTGAGAGGTAGTGAGAAGACGCGAGGTAACGACCCTCCCATAATTTTGAATATAAATCCTTTAAACTCGCTTAAATCTTTGAGACATTATTGGTTATTGAACACGTAAAAGTTTACCAACTGTAAAGGCACCGAAAAAGAAGAACAAAACACAAGAAAAGGTGTATAACGAGGCTCAAGAAACGTCGCCGGATTCTGATGACCCAGATGAGGTAAAAGAGACAGAGGATGATGACAGCGAACCCACAAAAACAACTGAGTCGAACCCCAGAAACGCAGATGTGTTACAAGGCATTAGAGAAATGGACAAACGAGTTGCAAATGAAATTGACAGCGTTAGCAATTGTTACAACCACAGTCACAACATTAAATGAGGGAAAAACACAAATGGATCCGTCTAGGGGTTTTATTAATTAAACAATCAAATATAAATAAAGTGTGGGGAGGAAACACAATAAACAAAGGCTGAGAACAAAAAGGAGCACAACTCCACGTCTGGACGGCCGCTCAAATTCCCCGTCTCTGAATCACTGCAGTGCGAGCTCTTAAATTGCCGACGGTGAATTTTCTGCAGGTGCGGAGAAAATCAACTCTAAATGAAAACACAAGCAGCAACACAACACAAGAGGGCGACAAAGTAACAAATAAATAAATAATAAATACATGGACATGTAACAGCAATCAAAGAGATAAATGAACGTGTAAAGGAGGCCGAGGAACACATTTCGGGAGCGGAAGATGAAATCGTTCAACTTAATGCTCGTGCAAATTCCGTCGAGTTAAGAAATTGATGGACAAGGTTGATGACATAGAAAACAAGAGCACGCGTATGCTACGGCGCAGCTTGCGCGTTGACGCATAGCCCTACGCCGTGGTTGTCGGTGTCGCTGACGTGCACCTCTCAAAAAATGTAACAACGTGTAGCGCAAGCTCTGTGATTGGTCGGCTTGATAGCGCTGACGAGTCTGGGCGGGACAGAGAGCCGTGCAAACGGCGCGAGCCTGATGGAGCAATTGTTTACAAGTGTGGAGTCCCGTGAAGGAGCTCCGGATGGTAAGTTTTGTCTTGTGTTTACCTCGTAGTTAAAGTTGCTGCACGTCCGCCGGTTCCTGCCTCAAAGTGAGCGAGTTTGAGCCACTTGTACATTCAGGAAGCGTTCAGAAAAAAACAAAACACCAGCGAAGAAACTCGACACAGAGGAACATTTACACATCACTGCCAACTAGCGTTTCGGAAGTGTTAATGCAGACTAACAGAAACAGCGCACAGAAGTATAAATGCACATCTACATGCGCGTTGCATGCGCCGTGGGTTACGCCGGTCACTTGACGCAGAAGTATAAACCAGGCTTCAGGGTGCTTTCACACTAGCACTTTTGGTCCACACTTGGGTTCTTTGATGTCATATTACGGTACGTTTTGCTAGTGGGAACGTGTCTTCTGAACTCGGGTGTGCACCCGTTAACAGTACCCGAGTCCAATGAATGCAATTGTACCAAAGAACGGAAGTGAACTGCCAACTGTACAACAATCTATTGTTTTCATAACGTTCGTTCACGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTCACGTATTGTACCTTGGTGACAAGCGGGTCTGAGCCAGGGCAAACACAGTAATAATTTCTGCTTGTCTCCTCCAGAAACAGCTTCTGCAGACACTGTGTGATGTTCTGAATGTTTATAATATTTTTGTGGCAAATGGACGCGAGTTGCTTTCTGAATCCCCAAAACTAAAAGATTCAGTAAAAGCAGATCGACCGTGATGTGCGGACATCTTTCCATTTTGGCGCTTTGCTTTCGTGACTGTCACCTAGCAACAGTCGTAAACAAAACAGCAGGTTGATGACGCAAGCGTACCGGGTTCAGAAGGAAAAAAGACAGTGTGAACACAAACCAACGAAGGTGGCAAGGGGGGCAATTGAACTTAGATACGGTCCAGGCAATTGAACCAAATGTGAAAGCACCCTTAAAATGTCTTAAAATTCAAATAGAAAAAAACTTTAGGCTGTAAAAATCTTAAATTCGCTGTAATATTCAATTGTAGGGCTTAAATAATTTCAAACGGGTCTAAATTTTCAAATGTCCAGGTAAAGCTACCCAATCAGGCCAAGAGCTGTATACAGTCACCAACAATACATCTCAATAAAACTTTTAATATTAAACTCTATTTTACAATACGGTTCCTCACAATAACATTTGTAAGTTCTCCATGTAGTTGTAGACCAAACTTGTGGACGTTTAGGTTATTATAGTTTTTAAAGCTTGTCAAAGAAAGATTTGCTTGTTCTGACACATTATTTAAGTATTATTTAAGTCAGAGGTTCTCAAACTGTGGTATGTATACCACTAGTGGTACGCGGACTGCCTTCTAGTGGTACCCAGAGTAATCCAATAGTCATTTGTACATGCAACATATAGTAAAATATTATCAAAAATGGTTCATTTATGAATATGATGACATATAGCCTTTATTTATGAGGTCCAAACAGCATTTCCAGGCTTTGATAAAAAGGATACTATAGGTTTACACTTTCCATTTAAGTACAGGAGATTATTTTTTTACTTTTTAATAACAGTAGCCGACCATTTTTAATAAACGTTTAAAAGCACATTTTAATTAAATTTAAAAACAAATAAATAATTAAATTAAATTAAATAATTAAATTTGATTTAATTAACGTTGACATTTTATTTTGTTTGTTTGTTTTTTTTTACATATAAGCACAGCAGTGTTAATGTTCAAACTATTTATAAGGTTTAAAGTGGCCGATAATAATAAATATTATTAATAATATTTAATTCAATTCAGCTTTATCTGTATAGCGCTTTTACAATGTATATTGTGTCTAAGCAGCTTCACATAATTGGTCAAAGTAACTGGAACAGTGTGGTTCAGTTTTTAGTGTTTAAGTTCAGTTCAGTTCAGTTTAGCTCAGTTCAGTGTGATTTAATCATTACTGAGAGTTCAAACACTGAAGAGCAAATTCATCAATGCGTAGCTCTACCAATCCTGAACCATACAAGCCAGTGGCGACAGCGGAGAGGGAAAAAAACTTCACCTTAAAGGAGAGTGAAGAAAAAAAACCTTGAGAGAACCAGACTCAGTTGGGCACGACCATTTTAATTTCTCCGCTGGCCAAAAGTATAAGTAATAGTAATTAATATGCCACGTTTTTAAATTGTGCAGAGATGCAGATGCTTAATTAGGCCTACTATGCTACTGTATTTCAATACTGGTCATATGGTGGTACTTGGAGGGACAATTTTTTCTGAGGTGGTACTTGAAGAAAAAAGTTTGAGATCCCCTGATTTAAGTAATTAGATTTTTTTTTTAATGGGACAAGCAAATCCTTTATGTTTAGCCCTGTATGAGTGTGAAATTTCATTCATAATGGTCTTAAAAGTCTTAAATTTGACTTGTTGAAACCCTGTAGAAAAGAAAGTGTCTGGTGTATAGGGAGAGAAAAACAGTACAGGTGGTTTGTGAAGCGCACTCAATAATAAACCTCGATATCTTCATAAACGTCCTCCAATGTCTCTCAGTCTCCCTCAGTAACTCCTCTATGTTCCTCTAG
Seq C2 exon
CTGCTGGAGTGGATCCGCCGCACCATCCCCTGGCTGGAGAACCGCGCGGCGGAGCAGACCATGCGCGCCATGCAGCAGAAGCTGGAGGATTTCCGGGACTACAGGCGCGTTCACAAGCCTCCGCGCGTGCAGGAGAAATGCCAGCTGGAGATCAACTTCAACACCCTGCAGACCAAGCTGCGCCTGAGCAACCGTCCCGCCTTCATGCCCTCCGAGGGGAAGATGGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001431:ENSDART00000001649:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(9.9=35.5)
A:
NA
C2:
PF0043516=Spectrin=FE(68.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]