MmuINT0010635 @ mm10
Intron Retention
Gene
ENSMUSG00000000530 | Acvrl1
Description
activin A receptor, type II-like 1 [Source:MGI Symbol;Acc:MGI:1338946]
Coordinates
chr15:101136128-101137130:+
Coord C1 exon
chr15:101136128-101136227
Coord A exon
chr15:101136228-101136983
Coord C2 exon
chr15:101136984-101137130
Length
756 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TTCCCTTGGCCACGGATTAGGAA
3' ss Score
1.37
Exon sequences
Seq C1 exon
GACTTCCTGGACAGCGACTGTACTACGGGCAGCGGCTCGGGGCTCCCCTTCTTGGTGCAGAGGACGGTAGCTCGGCAGGTTGCGCTGGTAGAGTGTGTGG
Seq A exon
GTAAGCACTCAACGGGCTGGGGGTGAGGACCAAAGGCTCCCATAGGGCTGGAGAGGGCAGGAAGCTTTCAGCTTCCAGGATCACAAATGGATCCAGCCTGGGTCAGAGTAAGACACTCTGCTGGGCAGAGGAGTAGGTTGATCCTGGGCCAAGGTTAGGTCCTTCTTCAAGGACATGGATGAGCTAATAAGCTAAGGGTAGCCCAAAGCTGAGACAAGATGTTGATAAAGGTATATTCAGATTTGAGGAGAGCAATGGGGCTCAGCAGGTAAAGGTGATGGCCTAAATTCAATCCCTGGGACATATACGACAAGAGGAGAGAACTGTCTCTCTCAGGTTGTCCTCTGACCCCCATATGTGATTCCAGTTAGTGTGTATCACACACACACACACACACACACACACACAACCACCACCACCAATACCAACACACACAAATGACTAAATAAATAAATACATAAATGTGACTTAAAAATTTTTTTAAAGACAGCTGCAGCGGTGGCACATGCCTTTAATCCCAGCACTAGGAAGGTGGAAGCAGGCAGATCTCTCTGAGTTCAAGGCCAGCCTGGTCTACCACAGCAAGTTCCAGATCAGCCAGACATGAGACCTTATCTTTAAAAAAAAAAAAAAAGTTTAAAAAAAAATCCGATTTTTACAGAGGGGATCTTTATAGCATCCAGAATTGGGGTGGGGTCTTCTAGGGCTATGTGTGTCTAGTATGTGGTCCTTATTCTTCCCTTGGCCACGGATTAG
Seq C2 exon
GAAAGGGCCGATATGGTGAGGTGTGGCGCGGTTCGTGGCATGGCGAGAGTGTGGCGGTCAAGATTTTCTCCTCACGAGATGAGCAGTCCTGGTTCCGGGAGACGGAGATCTACAACACAGTTCTGCTTAGACACGACAACATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000530:ENSMUST00000000542:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
A:
NA
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCTGGACAGCGACTGTA
R:
CTAGGATGTTGTCGTGTCTAAGCA
Band lengths:
246-1002
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types