RnoINT0012805 @ rn6
Intron Retention
Gene
ENSRNOG00000028713 | Acvrl1
Description
activin A receptor like type 1 [Source:RGD Symbol;Acc:2029]
Coordinates
chr7:142778193-142779176:+
Coord C1 exon
chr7:142778193-142778292
Coord A exon
chr7:142778293-142779029
Coord C2 exon
chr7:142779030-142779176
Length
737 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TTCCCTTGGCCACGGATTAGGAA
3' ss Score
1.37
Exon sequences
Seq C1 exon
GACTTCCTGGTCAGCGACTGTACCACAGGCAGCGGCTCAGGGCTACCCTTCTTGGTGCAGAGGACAGTAGCGCGACAGGTTGCACTGGTGGAGTGTGTGG
Seq A exon
GTAAGCACTCAGTGAGCTGGGGATAGACCTGGGGAGGTCAGGAAGCTCTTGGCTTCCAGGATCCAGCCTGGATCCAGCCTGGGCCAGAGTAAGATACTCTGCTAGGTAGGGTTGGTTCTGGGCCAAGGTCAGGTCATTTTTGCAAGGACAGGGATGAACTGATAAGCTAAGAGTAGCCCAAAGCTGGGACAAGATGTTAATAAAGGTATATTTTCAGGTTTGAGGAGAGCCATAGGGCTTAGCAGGGGAAGGCACTAGAACCAAGACTGATGGCCCAAATCCAATCCCTGCGACGTACTCGTCGAGAGGAGAGAACCATCTTCCTCAGATTGTCCTCTGACCTCCACATGTGATCCCATTTAGTGTGTATCACACACACACACACACACACGAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATGAAAAATATTGTGATCTAGAAGGCAGCTGGGGTTTTTGGCACATGCCTTTAATACCAGCACTAGGGAGGCAGAGGCAGGCAGATCTCTGTGAGTCCAAGGCCAGCCTGGTCTACATCGCAAGTTCCAAATCAGCAAGACAAATGAGACCTTATACTTAAAAAAAAAAAAAAGTTAAAAATAAATAAAATCGGATTTTTGCAGAGGGGATCTATCTTCATAGCATCCGGAATTGGGGTGGGGGTTTTTAAGGACTATGTGTGTCTAGTGCGTGGTCCTTATTCTTCCCTTGGCCACGGATTAG
Seq C2 exon
GAAAGGGCCGATATGGCGAGGTGTGGCGCGGTTCGTGGCATGGCGAGAGTGTGGCGGTCAAGATTTTCTCCTCACGAGATGAGCAGTCCTGGTTCCGGGAGACAGAGATCTACAACACAGTTCTGCTTAGACACGACAACATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028713:ENSRNOT00000008673:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
A:
NA
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCTGGTCAGCGACTGTA
R:
CTAGGATGTTGTCGTGTCTAAGCA
Band lengths:
246-983
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]