MmuINT0011184 @ mm9
Intron Retention
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26852255-26860468:+
Coord C1 exon
chr2:26852255-26852434
Coord A exon
chr2:26852435-26860263
Coord C2 exon
chr2:26860264-26860468
Length
7829 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
GGAATCTTCTCTTTCTGCAGATG
3' ss Score
9.42
Exon sequences
Seq C1 exon
GTGGGAGACTCAAGTCTTGGCACCGTGCCCGGTGACCTGTGGTGGGGGGCGAGTGCCACTGTCTGTTCGTTGTGTGCAGCTAGACCGTGGCCACCCGATATCTGTACCTCACTCCAAGTGCTCGCCAGTGCCTAAGCCAGGCTCCTTCGAGGACTGCAGCCCTGAGCCTTGTCCTGCTAG
Seq A exon
GTGAGTACCTTGCCTGGGAGATAGGCAGCCATGGATCTGTATTAGGCTCTGCCATCAGCCCCAGATGATGTAAAGCACATATGTAGGTTCTGGGAAGGTGATGATGTAGGCATATTTTTAAAAAAATCTATTTAGTTAATATTTATGAGACAGGGTCTCACTATGTGGCCATGGCTGGCCTAGAATTTGTAGATCTGGAACTCACAGAGATCCTCAGAAGTGTGTATCACAACTCCTGGCCATCCATCCATCCAATCCTGGGGCTTTGTGCATGTTAGAAAGCACTCTAGCACTGAGCTGTATTCCCAGCTTCCCTTTTACCTTTTATGTCAAGACAGGGTCTCACAAGATGCTCACTAGACAGACAGGGTCTGACAAGATGTTCACAAGACAGACAGGGTCTCACAAGATGCTCACTAGACATACAGGGTCTCACAAGATGCTCACTAGACAGACAGGCTCTCACAAGATGCTCACTAGACAGACAGGCTCTCACAAGATGCTCACTAGACAGACAGGCTCTCACAAGATGCTCACGAGTGTCGCTCTGTAGCTCAGCCTTGGTAGGGGCACTGGTTCATGGAGTACAATTATCTGGAGCTCTGGAGATTTCAAGGCCAAGTGGTAGCTCAACTCTGTGCATGAAAAGGCAGGGATGCCATTCCTAGCAGAAACAGAAGAGCTACTAACACAGTCTGACAGGCTTTCTTTTTAAAAAGATTTAGTTAGTTAGTTTTTGTTTGAGTGCTCTATCAGCATGTACACCTGCAGGCCAGAAGAGGGCATCGGATCCCAGTATTGATGGTTATGAGCCACCATGTAATTGCTGGGAATTGAACTAAGGATTTCTGGAAGAGCAGACAGTGCTCTTAACTACTAAGCCATCTCTCCAGCCCCACCTGCCAGGCTTTTTATTTTTTAAATCAAGTTGCTTGACTTTCTCTTCTGTATATGTAATGATTTTAACTTTTTAGCTTAGAATCTACTTGAGACACCCCCCCCCCCCAGCACGTGTGTCTGCCTTCTACTGTTGCTAAAGTTCCCTATCTGTGCTCTTTATTTTTGCATGTTATATTTATAAATGGTTTAGAAATTTTTTTTTTTTGCTTTTTTTTTTTTTGAGACAATGTCTTATGTAGACCAGGCTAGCTTCAAATTCTCTATATAACTGAATATAGCCTTGAATTCTTTAACCTTTACCTCTCAAGTGTTTGGGATGCTAGGCATGTGCCACCACACCCAGCTAAATCTTTGTTTGTTTGTTTGTTCGTTCCATGGGAACTGAAGGCACATGTGAGTTCTGGTTACCGCTGAGGTGTCAGTGTGGTCATTCTGTAATCTGCACTGACCTGTCTATGGTCTCTCTTCTTTGTAGGGCACTAGTGTGGGAAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCCTGTGTTCTAAGTTGGTAAACAAATAATCTGCGCATGAGCCAAGGGTATTTACGACTACTTGTACTCTGTTTTTCCCGTGAACGTCAGCTCGGCCATGGGCTGCAGCCAATCAGGGAGTGATGCGTCCTAGGCAATTGTTGTTCTCTTTTAAATAGAAGGGGTTTCGTTTTTCTCTTTTTCTTGCTTCTTACACTCTGGCCCCAAAAAGATGTAAGCAATAAAGCTTTGCCGTAGAAGATTCTGGTTGTTGTGTTCTTCCTGGCCGGTCGTGAGAACGCGACGAATAACAATTGGTGCCGAATTCCGGGACGAGAAAATCCGGGACGAGAAAAAACTCCGGACTGGCGCAGGAGGGATACTTCATTTCAGAACCAGAACTGCGGATCACGTTTATAAAGGTTCCCGTAACACAGACTGTTGAGAAGGATTCAACTGCCGAATTCAGAACTCATCAGCTGGGGAACGACGGTGATAAAGGTTCCCGTAAAGCAGACTGTTAAGAAGGATTCAACTGTATGAATTCAGAACTTTTCAGCTGGGGAACGAGAGTACCAGTGAGTATGTTTGGCCTTGAATTTTTTCTGGTGTTAGGAGCCCTTTTGTTCTTTTTCACATGCTATCAAGTGATTAAGATAGGGCTGAAAATTCTAGAGGAAATTCAGGACAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAACAAAGAGGAAGTATGGTACACAAAATAAGTATACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTAAGGTTAGGTAGGAATACCTGGAGAGAGATTAGAAGAAAAAGAGGAAAAAGGGAGAAGAAAAAAGATCGATTAGCGGAGGTCTCTAGGAGATACTCGTCACTAGATGAGCTCAGGAAGCCAGCTCTTAGTAGCTCTGAAGCAAGTGAAGAATCCTCCTCTGAGGAAACAGACTGGGAGGAAGAAGCAGCCCATTACCAGCCAGCTAATTGGTCAAGAAAAAAGCCAAAAGCGGCTGGCGAAAGTCAGCGTACTGTTCAACCTCCCGGCAGTCGGTTTCAAGGTCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCAATGCGCAGAGGGGCAATGCGCAGAGAGGTGCGCAGAGAGGCAATGCGCAGAGAGGTGCGCAGAGAGGCAGTGCGCAGAGAGGTGCGCAGAGAGGCAGTGCGCAGAGAGGCAGTGCGCAGACTCATTCATTCCCCGAGAGGAACAAAAGAAAATACAACAGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGGTAGAATACGTACAGATTAAGGAAATTGCCGAGTCGGTTCGTAAATACGGAACCAATGCTAATTTTACCTTGGCGCAGTTAGACAGGCTCGCTGGCATGGCACTAACGCCTGCTGATTGGCAGACGGTTGTAAAAGCCGCTCTCCCTAGTATGGGCAAATATATGGAATGGAAAGCGCTTTGGCACGAAGCTGCACAGGCGCAGGCCCGAGCAAACGCAGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTTTTGACTTGTTAACGGGTCAGGGAGCTTATTCTGCTGATCAGACAAACTACCATTGGGGAGCTTATGCCCAGATTTCTTCCACGGCTATTAGGGCCTGGAAGGCGCTCTCTCGAGCAGGTGAAACCACTGGTCAGTTAACAAAGATAATCCAGGGACCTCAGGAATCTTTCTCAGATTTTGTGGCCAGAATGACAGAGGCAGCAGAGCGTATTTTTGGAGAGTCAGAGCAAGCTGCGCCTCTCATAGAACAGCTAATCTACGAGCAAGCCACAAAGGAGTGCCGAGCGGCCATAGCCCCAAGAAAGAACAAAGGCTTACAAGACTGGCTCAGGGTCTGTCGAGAGCTTGGGGGACCTCTCAGCAATGCAGGTTTAGCGGCTGCCATCCTTCAATCTCAGAACCGCTCCATGAGCAGAAATAATCAGAGGACATGTTTTAATTGCGGAAAGCCTGGGCATTTTAAGAAAGATTGCAGAGCTCCAGATAAACAGGGAGGGACTCTCACTCTTTGCTCTAAGTGTGGCAAGGGTTATCATAGAGCTGACCAGTGTCGCTCTGTGAGGGATATAAAGGGCAGAATTCTTCCCCCACCTGATAGTCAATCAACTGATGTGCCAAAAAACGGGTCATCGGGCCCTCGGTCCCAGGGCCCTCAAAGATATGGGAACCGGTTTGTCAGGACCCAGGAAGCAGTCAGAGAGGCGACCCAGGAAGACCCACAAGGGTGGACCTGCGTGCCGCCTCCGACTTCCTACTAATGCCTCAAATGAGTATTCAGCCGGTGCCGGTGGAGCCTATACCATCCTTGCCCCCGGGAACCATGGGCCTTATTCTCGGCCGAGGTTCACTCACCTTGCAGGGCTTAGTAGTCCACCCTGGAGTTATGGATTGTCAACATTCCCCTGAAATACAGGTCCTGTGCTCAAGCCCTAAAGGCGTTTTTTCTATTAGTAAAGGAGATAGGATAGCTCAGCTGCTGCTCCTCCCTGATAATACCAGGGAGAAATCTGCAGGACCTGAGATAAAGAAAATGGGCTCCTCAGGAAATGATTCTGCCTATTTGGTTGTATCTTTAAATGATAGACCTAAGCTCCGCCTTAAGATTAATGGAAAAGAGTTTGAAGGCATCCTTGATACCGGAGCAGATAAAAGTATAATTTCTACACATTGGTGGCCCAAAGCATGGCCCACCACAGAGTCATCTCATTCATTACAGGGCCTAGGATATCAATCATGTCCCACTATAAGCTCCGTTGCCTTGACGTGGGAATCCTCTGAAGGGCAGCAAGGGAAATTCATACCTTATGTGCTCCCACTCCCGGTTAACCTCTGGGGAAGGGATATTATGCAGCATTTGGGCCTTATTTTGTCCAATGAAAACACCCCATCAGGAGGGTATTCAGCTAAAGCAAAAAATATCATGGCAAAGATGGGTTATAAAGAAGGAAAAGGGTTAGGACATCAAGAACAGGGAAGGATAGAGCCCATCTCACCTAATGGAAACCAAGACAGACAGGGTCTGGGTTTTCCTTAGCGGCCATTGGGGCAGCACGACCCATACCATGGAAAACAGGGGACCCAGTGTGGGTTCCTCAATGGCACCTATCCTCTGAAAAACTAGAAGCTGTGATTCAACTGGTAGAGGAACAATTAAAATTAGGCCATATTGAACCCTCTACCTCACCTTGGAATACTCCAATTTTTGTAATTAAGAAAAAGTCAGGAAAGTGGAGACTGCTCCATGACCTCAGAGCCATTAATGAGCAAATGAACTTATTTGGCCCAGTACAGAGGGGTCTCCCTGTACTTTCCGCCTTACCACGTGGCTGGAATTTAATTATTATAGATATTAAAGATTGTTTCTTTTCTATACCTTTGTGTCCAAGGGATAGGCCCAGATTTGCCTTTATGTGGTAAATGCAGTAAATCTTTTAGAAGTGGCTGGAGTGATTAAGCCTTCCAGTAGAGTTGCCAATATTTTTCAGCAGATACAATTAGTTTTGTTATCTAGAAGATCTCCTGTTTATATTACTCATGTTAGAGCCCATTCAGGCCTACCTGGCCCCATGGCTCTGGGAAATGATTTGGCAGATAAGGCCACTAAAGTGGTGGCTGCTGCCCTATCATCCCCGGTAGAGGCTGCAAGAAATTTTCATAACAATTTTCATGTGACGGCTGAAACATTACGCAGTCGTTTCTCCTTGACAAGAAAAGAAGCCCGTGACATTGTTACTCAATGTCAAAGCTGCTGTGAGTTCTTGCCAGTTCCTCATGTGGGAATTAACCCACGCGGTATTCGACCTCTACAGGTCTGGCAAATGGATGTTACACATGTTTCTTCCTTTGGAAAACTTCAATATCTCCATGTGTCCATTGACACATGTTCTGGCATCATGTTTGCTTCTCCGTTAACCGGAGAAAAAGCCTCACATGTGATTCAACATTGTCTTGAGGCATGGAGTGCTTGGGGGAAACCCAGACTCCTTAAGACTGATAATGGACCAGCTTACACGTCTCAAAAATTTCAGCAGTTCTGCCGTCAGATGGACGTAACCCACCTGACTGGACTTCCGTACAACCCTCAAGGACAGGGTATTGTTGAGCGTGCGCATCGCACCCTCAAAGCCTATCTTATAAAACAGAAGAGGGGAACTTTTGAGGAGACTGTACCCCGAGCACCAAGAGTGTCGGTGTCTTTGGCACTCTTTACACTCAATTTTTTAAATATTGATGCTCATGGCCATACTGCGGCTGAACGTCATTGTTCAGAGCCAGATAGGCCCAATGAGATGGTTAAATGGAAAAATGTCCTTGATAATAAATGGTATGGCCCGGATCCTATCTTGATAAGATCCAGGGGAGCTATCTGTGTTTTCCCACAGAATGAAGACAACCCATTTTGGGTACCGGAAAGACTCACCCGAAAAATCCAGACTGACCAAGGGAATACTAATGTCCCTCGTCTTGGTGATGTCCAGGGCGTCAATAATAAAGAGAGAGCAGCGTTGGGGGATAATGTCGACATTTCCACTCCCAATGACGGTGATGTATAATGCTCAAGTATTCTCCTGCTTTTTTACCACTAACTGGGAACTGGGTTTGGCCTTAATTCAGACAGCCTTGGTTCTGTCTGGACAGGTCCAGATGACTGACACCATTAACACTTTGTCAGCCTCAGTGACTACAGTCATAGATGAACAGGCCTCAGCTAATGTCAAGATACAGAGAGGTCTCATGCTGGTTAATCAACTCATAGATCTTGTCCAGAAACAACTAGATGTATTATGACAAATAACTCAGCAGGGATGTGAACAAAAGTTTCCGGGATTGTGTGTTATTTCCATTCAGTATGTTAAATTTACTAGGGCAGCTAATTTGTCAAAAAGTCTTTTTCAGTATATGTTACAGAATTGGATGGCTGAATTTGAACAGATCCTTCGAGAATTGAGACTTCAGGTCAACTCCACGCGCTTGGACCTGTCGCTGACCAAAGGATTACCCAATTGGATCTCCTCAGCATTTTCTTTCTTTAAAAAATGGGTGGGATTAATATTATTTGGAGATACACTTTGCTGTGGATTAGTGTTGCTTCTTTGATTGGTCTGTAAGCTTAAGGCCTAAACTAGGAGAGACAAGGTGGTTATTGCCCAGGCGCTTGCAGGACTAGAACATGGAGCTCCCCCTGATATATGGTTATCTATGCTTAGGCAATAGGTCGCTGGCCACTCAGCTCTTATATCTCACGAGGCTAGACTCATTGCACGAGATAGAGTGAGTGTGCTTCAGCAGCCCGAGAGAGTTGCAAGGCTAAGCACTGCAATGGAAAGGCTCTGCGGCATATATGAGCCTATTCTAGGGAGACATGTCATCTTTCATGAAGGTTCAGTGTCCTAGTTCCCTTCCCCCAGGCAAAACGACACGGGAGCAGGTCAGGGTTGCTCTGGGTAAAAGCCTGTAAGCCTAAGAGCTAATCCTGTACATGGCTCCTTTACCTACACACTGGGGATTTGACCTCTATCTCCACTCTCATTAATATGGGTGGCCTATTTGCTCTTATTAAAAGAAAAAGGGGGAACTGTGGGAAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCCTGTGTTCTAAGTTGGTAAACAAATAATCTGCGCATGAGCCAAGGGTATTTACGACTACTTGTACTCTGTTTTTCCCGTGAACGTCAGCTCGGCCATGGGCTGCAGCCAATCAGGGAGTGATGCGTCCTAGGCAATTGTTGTTCTCTTTTAAATAGAAGGGGTTTCGTTTTTCTCTTTTTCTTGCTTCTTACACTCTGGCCCCAAAAAGATGTAAGCAATAAAGCTTTGCCGTAGAAGATTCTGGTTGTTGTGTTCTTCCTGGCCGGTCGTGAGAACGCGACGAATAACACACTAGTTTCTCAGCCAGGCAAGATTCTGCCTCAATGGGCACATAGGGAACTTTAGTTTAATGGACACACTTGGGGATATCTGCTATGGCTCCTAGTGGGCAGAGTTAATCATGGCCATCTGGCAGTGCACAGGACAGCCCCTCCCCTCCAGGACAAAGGCTGTGCAGAGTCAGTGGTGCAGGGTATAGGCCATACACACCTGATGCGGGGTCTTAGTCTGGCTCATACCATTACCATGGTTCCCAAGGGTCCCAGAGCAGCACTGGGCCAATCAATGACACAAGCATGAATACTGATGCTCAATGAGGTCAGTGGAGACCCATGGCCAGAGACTGTGCAGACCTTTGTCGCAGATGTCAAGGGTCTTCAATAGTCCCACACACAGAGGCCCAAATAGCTGTCATTGGAATCTTCTCTTTCTGCAG
Seq C2 exon
ATGGAAAGTCCTGTCCCTTGGCCCATGCTCAGCCAGCTGTGGCCTTGGCACTGCCACACAAATGGTGGCCTGCATGCAGCTTGACCAGGGCCATGACAATGAGGTGAATGAAACTTTCTGTAAGGCTCTAGTGCGGCCTCAGGCCAGTGTCCCCTGCCTCATTGCTGACTGCGCATTCCGGTGGCACATCAGCGCCTGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-Adamts13:NM_001001322:23
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=PU(15.4=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: