Special

MmuINT0011574 @ mm9

Intron Retention

Gene
ENSMUSG00000015850 | Adamtsl4
Description
ADAMTS-like 4 [Source:MGI Symbol;Acc:MGI:2389008]
Coordinates
chr3:95488882-95489476:-
Coord C1 exon
chr3:95489379-95489476
Coord A exon
chr3:95488940-95489378
Coord C2 exon
chr3:95488882-95488939
Length
439 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCCCACCCCTCGGTGTGCAGGCT
3' ss Score
6.49
Exon sequences
Seq C1 exon
AGCACCCTCCAAGCCCCGATGCCAGAGTAGCCACCCTGTCCCCTGCTCCCCAGCCCAGGGGCAGTCACAGGAAGAGCAATGGAATCTTGGCTGGGCAG
Seq A exon
GTAAGAAAGAGGGGTAGCAGTGGAAAGGACCAGCTCTGTCTCCATTAGGGCAGGGAAGGGGCAGAGGGTAGCGGTGCACACCTGTAACTCAAGCAGAGGCAGGTGGATGCCTGTGAGTTTGAGGGCAACCTGGCCTACAGAGTGAGTTCCAGGACATTCAGAACTCAGAACTGTTACACAGAGAAACCCTGTCTCAACACACACACACACACACACAAACACACACACACACACACACACACACACACACACACACACGACACACGAGAGAGAGAGAGGGGGGGGGGGGGACACACACGCACACAGGAAGGGACTGTGAACTGTTGGAAGGGGTCTGGCAAGTGACAAGGGACGTCTGCTTCCTGAGAAGCTGGGTGGGGGCAGGCAATGTCGTAACACCTCTGGCTCCCTCTGATGTCCCCCACCCCTCGGTGTGCAG
Seq C2 exon
GCTCTGGCTGTGTATGATGCTGCTCCTGCCTCTCCCTCAGCCCTGCCAGGATCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015850-Adamtsl4:NM_144899:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion (1st CDS intron)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.180
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000015994





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000015994f480A, ENSMUSP00000113424, ENSMUSP00000120844
  



Associated events






Conservation


Human
(hg38)
chr1:150552309-150552542 
ALTERNATIVE
HsaINT0004357
(ADAMTSL4)
Human
(hg19)
chr1:150524785-150525018 
ALTERNATIVE
HsaINT0004357
(ADAMTSL4)
Rat
(rn6)
chr2:197811900-197812316 
ALTERNATIVE
RnoINT0013676
(Adamtsl4)
Cow
(bosTau6)
chr3:20195101-20195316 
LOW PSI
BtaINT0014385
(ADAMTSL4)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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