RnoINT0013676 @ rn6
Intron Retention
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197811842-197812528:-
Coord C1 exon
chr2:197812317-197812528
Coord A exon
chr2:197811900-197812316
Coord C2 exon
chr2:197811842-197811899
Length
417 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ACCACCCCCTCCTTGTGCAGGCT
3' ss Score
10.33
Exon sequences
Seq C1 exon
GTCCTAAAGGGGTGGACCACTCCTCCCCCACCCCTCCAGACTGTGGGTGTTGTGCTGAGACAGCCCTTCAGTCCCCCAGATATCTGCAGGGGTAACACCATGCTCCTCCCTCCTCAGAGCACCCTCCATCCCTGATGCCAGAGTAGCTACCCTGTCCCTTCTCCCCAGCCCAGGGGCAGTCACAGGAAGAGCATGGAGCTTTGGCTGGGCAG
Seq A exon
GTAAGAAACGGGTAGCAGTGAGAGGAACGGCTCTATCTCTGATACTTAGGGCAGGGAAGGAGCTGGGGGTAGTGGTGCACACCTGTAATCCAAGCAGAGGCAGGTGGCTGCCTGTGAGTTTGAGGCCAGCACTGTCTACAGAACAGAGTTCCGGGACATTCAGAACTGTTACACAGAGAAACACTGTTTCAAAACACACACACACACACACACACACACACACACACACACACCCGGGTGGGGGTGGGGAGGGCTCAAGCAAGCTCAGGGACCGGATTGCTGGAAGGGGTCTGGCGAGTGACAAGGGACTCCTGCTTGCTGAGGAGCTGGCCACCAGGCTGTGGAGAGCCTGGGAGGGGGCAGGCAATGTCGTAAGGCCTGGCTCCCTCTGATGTCCACCACCCCCTCCTTGTGCAG
Seq C2 exon
GCTCTGGCTGTATGTCATGCTGCTCTTGCTTCTCCTTCAGCTCTGCCAGGATCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385:ENSRNOT00000074156:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTAAAGGGGTGGACCAC
R:
CTCCTGATCCTGGCAGAGCT
Band lengths:
270-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]