MmuINT0011575 @ mm9
Intron Retention
Gene
ENSMUSG00000015850 | Adamtsl4
Description
ADAMTS-like 4 [Source:MGI Symbol;Acc:MGI:2389008]
Coordinates
chr3:95488284-95488939:-
Coord C1 exon
chr3:95488882-95488939
Coord A exon
chr3:95488622-95488881
Coord C2 exon
chr3:95488284-95488621
Length
260 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGACCTTCTCCCCTCTGTAGCTG
3' ss Score
10.57
Exon sequences
Seq C1 exon
GCTCTGGCTGTGTATGATGCTGCTCCTGCCTCTCCCTCAGCCCTGCCAGGATCAGGAG
Seq A exon
GTGAGCCCGGGACAAGTGAGCCACTGCTACCCTGCCCAGGGTCCCTCCACTGTGCCCTGGCCTCCCCTGTAGGGTGGCTTCACATTCCCACTGGGAGACTTCGGCCCCTTGTATCAGGTTTGGCCCACCCAGACTGACTCCCTCTCTTAGTCTAATAACCTAGAAAAGGCTGGAGTTTGGCCCTACCTGTAAATGTGACCTTGGACAACGAATAACCCTTGAACCTTGAGACACTAATTCTGACCTTCTCCCCTCTGTAG
Seq C2 exon
CTGTTTGGACCTTCTCATCAGCTGCCATCAGAGGAGGGCCAGGTCCCTGAAGGCCTCTGGGGACCTTGGGGTCGATGGGCTTCCTGCTCCCAGCCCTGTGGGGTGGGGGTGCAGCGCAGGAGCCGAACATGTGAACTGCACCCAGCCCTACCCCTCCCTCCCCGACCCCCAAGACATCCAGAAGCCCACCGGCCCCGGGGCCAGGGCTCCAGACCCCAGACTCCACGGGATCCCCAGTCTCTGTATAGGCCACAGCCTCGGGGAAGGGGTGGCCCTCTTCGAGCTCCTGCTTCTCAAGTGGGGAGAGAGGAAACCCAGGAGCCTCAAGGGGCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015850-Adamtsl4:NM_144899:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.777
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=WD(100=28.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGATGCTGCTCCTGCCTCT
R:
TGGCCTATACAGAGACTGGGG
Band lengths:
298-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: