RnoINT0013677 @ rn6
Intron Retention
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197811235-197811899:-
Coord C1 exon
chr2:197811842-197811899
Coord A exon
chr2:197811573-197811841
Coord C2 exon
chr2:197811235-197811572
Length
269 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGACCTTTTCCCCTCTCTAGCTG
3' ss Score
10.64
Exon sequences
Seq C1 exon
GCTCTGGCTGTATGTCATGCTGCTCTTGCTTCTCCTTCAGCTCTGCCAGGATCAGGAG
Seq A exon
GTGAGCCCAGGACAAGTGAGCCACTGCTACCCTGCCCAGGGTCCCTCCACTGTACCCCGGCCTCCCCTTGGGGGTGGCTTCACATTCCCACAGGGAGACTTCAGCCCCTAGTATCAGGTTTGGCCCACCCAGTCTCCCTGCTGATTCCCTCTCTTTTAGTCAAATACCACAAAAAAGGCTGGAGTTTGACCCTACCTGTAAATGTGACCTTGGACAACTAATAACCCTTGAACCTTGAGACACTAATTCTGACCTTTTCCCCTCTCTAG
Seq C2 exon
CTGTTGGGTCCTTCTCTTCAGACACCATCAGAGGAGGACCAGGTCCCTGAGGGTCTCTGGGGACCTTGGGGCCGATGGGCCTCCTGCTCCCAGCCCTGTGGGGTGGGGGTGCAGCGCCGGAGCCGAACATGTGAACTGCACCCAGCCCTGTCCCTCCCTCCCCGACCCCCAAGACATCCAGAAGCCCCCCAGCCCCGGGGCCAGGGTTCCAGACCCCAGACTCCACGGGATCCCCAGTCCCTGTATAGGCCACAGCCTCGGGGAAGGGGTGGCCCTCTTCGAGGTCCTGCTTCTCAAGTGGGGAGAGAGGAGACCCAGGAGCCTCGGGGGGCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385:ENSRNOT00000074156:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.761
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=WD(100=28.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTGCTCTTGCTTCTCCT
R:
GCTGTGGCCTATACAGGGACT
Band lengths:
299-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]