MmuINT0011581 @ mm9
Intron Retention
Gene
ENSMUSG00000015850 | Adamtsl4
Description
ADAMTS-like 4 [Source:MGI Symbol;Acc:MGI:2389008]
Coordinates
chr3:95484947-95485355:-
Coord C1 exon
chr3:95485183-95485355
Coord A exon
chr3:95485059-95485182
Coord C2 exon
chr3:95484947-95485058
Length
124 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGC
5' ss Score
2.97
3' ss Seq
TTGTGATCTTCCCTCCTCAGATG
3' ss Score
10.4
Exon sequences
Seq C1 exon
CACTCCGAGGGCCTGGGGGCCGCTCCATTATCAATGGGAACTGGGCTGTGGATCCTCCAGGGTCCTATACAGCCATTGGGACTGTCTTCCAGTATAACCGTCCTCCACGGGAAGAAGGCAAGGGGGAGAGTCTGTCAGCAGAAGGCCCTACCACTCAGCCTGTGGACGTCTAT
Seq A exon
GTGAGCTGGGGCAGGTGCTAGATCGTTAGGGAGGGAGGGAGGGCCCTTAGGGCAGAGCAGTGTGGATCTAGCCTAGCGTATGCCCCTCTTGTTACTCCAAGCCATTGTGATCTTCCCTCCTCAG
Seq C2 exon
ATGATCTTTCAAGAGGACAACCCAGGTGTTTTTTATCAGTATGTCATCTCTTCCCCTCCTGCAGTCCTAGAGAGTCCTTCCACAAAGCCTCCAGCCCTTCAGCCTCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015850-Adamtsl4:NM_144899:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.534 A=NA C2=0.368
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.1=100)
A:
NA
C2:
PF059869=ADAM_spacer1=PD(13.8=42.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCCGCTCCATTATCAATG
R:
CTGGAGGCTTTGTGGAAGGAC
Band lengths:
252-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: