RnoINT0013683 @ rn6
Intron Retention
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197808066-197808486:-
Coord C1 exon
chr2:197808314-197808486
Coord A exon
chr2:197808169-197808313
Coord C2 exon
chr2:197808066-197808168
Length
145 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGC
5' ss Score
2.97
3' ss Seq
TGGTGATCTTCCCTCCTCAGATG
3' ss Score
9.44
Exon sequences
Seq C1 exon
CACTTCGAGGGCCTGGTGGCCGCTCCATTATCAATGGGAACTGGGCTGTAGATCCTCCAGGATCCTACGCGGCCGTCGGGACCGTCTTCCAGTATAACCGTCCTCCTCGGGAGGAGGGCAAGGGGGAGACTCTGTCAGCAGAAGGCCCTACCACCCAGCCTGTGGATGTCTAT
Seq A exon
GTGAGCCTGGGACAGGAGCTGGAGTGGGCACTAGATCCTTGGAGAGGGAGGGCCCTTAGGGCAGAGCAGTGAGGCTAAGATAGGGGAGAAGCCTAGTGCATGCCCCTCTGGTCACCCCAAACCATTGGTGATCTTCCCTCCTCAG
Seq C2 exon
ATGATCTTTCAAGAGGACAACCCAGGTGTCTTCTATCAGTATGTCACCTCTGCAGCCCCAGAGAGCCCTTCCACAATGCCTCCAGCCCTTCAGCTTCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385:ENSRNOT00000074156:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=NA C2=0.457
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.1=100)
A:
NA
C2:
PF059869=ADAM_spacer1=PD(13.8=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAACTGGGCTGTAGATCC
R:
CAGGCTGAAGCTGAAGGGC
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]