MmuINT0012624 @ mm10
Intron Retention
Gene
ENSMUSG00000015452 | Ager
Description
advanced glycosylation end product-specific receptor [Source:MGI Symbol;Acc:MGI:893592]
Coordinates
chr17:34600495-34600932:+
Coord C1 exon
chr17:34600495-34600621
Coord A exon
chr17:34600622-34600706
Coord C2 exon
chr17:34600707-34600932
Length
85 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GCAACACTGTTCCTTCTCAGGAA
3' ss Score
7.23
Exon sequences
Seq C1 exon
GCTCTGTGGGTGAGTCTGGGCTGGGTACGCTAGCCCTGGCCTTGGGGATCCTGGGAGGCCTGGGAGTAGTAGCCCTGCTCGTCGGGGCTATCCTGTGGCGAAAACGACAACCCAGGCGTGAGGAGAG
Seq A exon
GTGAGTGAGAGCCTGCAGGTTCCAGGCAGCAGGTGAGGGCTGTCAGAGAGGGGCAGCCGAATGCCGCAACACTGTTCCTTCTCAG
Seq C2 exon
GAAGGCCCCGGAAAGCCAGGAGGATGAGGAGGAACGTGCAGAGCTGAATCAGTCAGAGGAAGCGGAGATGCCAGAGAATGGTGCCGGGGGACCGTAAGAGCACCCAGATCGAGCCTGTGTGATGGCCCTAGAGCAGCTCCCCCACATTCCATCCCAATTCCTCCTTGAGGCACTTCCTTCTCCAACCAGAGCCCACATGATCCATGCTGAGTAAACATTTGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015452:ENSMUST00000015596:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.248 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0240410=SCF=FE(45.7=100)
A:
NA
C2:
PF0240410=SCF=PD(27.2=75.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTATCCTGTGGCGAAAAC
R:
CATCACACAGGCTCGATCTGG
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types