RnoINT0015052 @ rn6
Intron Retention
Gene
ENSRNOG00000000439 | Ager
Description
advanced glycosylation end product-specific receptor [Source:RGD Symbol;Acc:69258]
Coordinates
chr20:4365612-4366079:+
Coord C1 exon
chr20:4365612-4365738
Coord A exon
chr20:4365739-4365824
Coord C2 exon
chr20:4365825-4366079
Length
86 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ACACCACTGTTCCTTCTCAGGAA
3' ss Score
9.4
Exon sequences
Seq C1 exon
GCTCTGTGGATGGGTCTGGGCTGGGAACGCTAGCCCTGGCCTTAGGGATCCTGGGAGGCCTGGGAATAGCCGCTCTGCTCATTGGGGCCATCCTGTGGCGAAAACGACAACCCAGACTCGAGGAGAG
Seq A exon
GTGAGTGAAAGCCAGTGGGTTCTGGGGCGGCATGTGAGGGCTGTTGGAGTGGGCCAGTGGGTTACCACACCACTGTTCCTTCTCAG
Seq C2 exon
GAAGGCCCCAGAAAGCCAGGAGGACGAGGAGGAACGTGCAGAGCTGAATCAGTCAGAGGAAGCGGAAATGCCAGAGAATGGTGCAGGGGGACCTTAAGAGCGCCCAGGCAAACCCTGTCTCCTTCAGCTTCCGACCTCAGCTGTGCTGGCTCCAGACGAGCTCCCCCACTCTACGATCCCAATTCAACCTCGAGCCACTTTCTTCTCCAACCAGAGCCCACATGATCCATGCTGAGTAAACACCTGACACATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000439:ENSRNOT00000000508:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.221 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0240410=SCF=FE(47.2=100)
A:
NA
C2:
PF0240410=SCF=PD(28.1=75.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGTGGCGAAAACGACAA
R:
GAGGTCGGAAGCTGAAGGAGA
Band lengths:
176-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]