MmuINT0012731 @ mm10
Intron Retention
Gene
ENSMUSG00000026922 | Agpat2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) [Source:MGI Symbol;Acc:MGI:1914762]
Coordinates
chr2:26596080-26596466:-
Coord C1 exon
chr2:26596291-26596466
Coord A exon
chr2:26596176-26596290
Coord C2 exon
chr2:26596080-26596175
Length
115 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TTTTTCCTTTCTACTGGCAGCTC
3' ss Score
10.05
Exon sequences
Seq C1 exon
GTCTCATGGAAATACTCCCTAAGCGCTGTGTGCAGATCGCCAAGCGTGAGCTAATGTTCACAGGGCCTGTGGGCCTCATCATGTACCTTGGGGGTGTCTACTTCATCAACCGCCAGCAAGCCAGAACTGCCATGTCTGTGATGGCCGACCTGGGCGACCTCATGGTCAAGGAGAAT
Seq A exon
GTGAGTATAGGCACAGTACAACAGGATAGCCTACTGCAAGGAGCCGCACAGCTTTCTTGGGGTGGTTACACAGGATGTGGGCAGCCTAGGCAGTTTTTTTCCTTTCTACTGGCAG
Seq C2 exon
CTCAAAGTGTGGATCTACCCAGAGGGTACACGCAACGACAATGGGGACCTGTTGCCCTTTAAAAAAGGAGCCTTCTACTTGGCCATCCAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026922:ENSMUST00000028286:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=FE(45.0=100)
A:
NA
C2:
PF0155316=Acyltransferase=FE(24.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAAGCGCTGTGTGCAGATC
R:
CCTGGATGGCCAAGTAGAAGG
Band lengths:
250-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types