RnoINT0015242 @ rn6
Intron Retention
Gene
ENSRNOG00000019466 | Agpat2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:RGD Symbol;Acc:1309229]
Coordinates
chr3:4047279-4047659:-
Coord C1 exon
chr3:4047484-4047659
Coord A exon
chr3:4047375-4047483
Coord C2 exon
chr3:4047279-4047374
Length
109 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
CTTTTCCTTTTTACTGGCAGCTC
3' ss Score
9.51
Exon sequences
Seq C1 exon
GTCTCATGGAAATACTCCCTAAGCGCTGTGTGCAGATTGCCAAGCGTGAGCTAATGTTCACAGGACCCGTGGGCCTCATCATGTACCTAGGGGGTGTCTATTTCATCAACCGCCAGCAAGCCAAAACTGCCATGTCCTTGATGGCCGACCTAGGCGACCTCATGGTCAAGGAGAAC
Seq A exon
GTGAGTATAGGCACAGTACAGCCTGCAGGGGACAGTACAGCTCTCCGGGGTAGTCCTGTGGGCTGTGGGCTGTGGGCAGCCTAGGCAGCCTTTTCCTTTTTACTGGCAG
Seq C2 exon
CTCAAAGTGTGGATTTACCCAGAGGGTACACGCAACGACAATGGAGACCTGTTGCCCTTTAAAAAAGGTGCCTTCTACTTGGCCATCCAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019466:ENSRNOT00000026408:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=FE(45.0=100)
A:
NA
C2:
PF0155316=Acyltransferase=FE(24.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAAGCGCTGTGTGCAGATT
R:
CCTGGATGGCCAAGTAGAAGG
Band lengths:
250-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]