MmuINT0015016 @ mm9
Intron Retention
Gene
ENSMUSG00000033544 | Angptl1
Description
angiopoietin-like 1 [Source:MGI Symbol;Acc:MGI:1919963]
Coordinates
chr1:158769154-158775556:+
Coord C1 exon
chr1:158769154-158769368
Coord A exon
chr1:158769369-158774710
Coord C2 exon
chr1:158774711-158775556
Length
5342 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
CACTCACTGCTTCCTAAAAGACG
3' ss Score
2.57
Exon sequences
Seq C1 exon
GAGAAGTCCACAGATAGCCCCAAGTTACATAGGTGGCCCAGCAAACTCAGTCCATTAGTGCTGTGAAAAGAAGTTCCTTACTCCTTGGATTCACCGGTCAGAGCAAAAAACGCAGTTACCTCTGAAGTAAAGCCGAACAAACTTCTACACTGATCTCAGAGAGCAAGGGCAAGGACGCACGTTCACGGACTCGCTTTTTTCAACAGACAACAAAG
Seq A exon
GTATTTTAATATTTCTCTTAGATTTATTCAAAATTCTATGTCAAATGCATCATTGTCCTTTGTACTAGAAAGTAAGAGATTTCTCAGGGAACTTTAGAAGATGCTGCCAATTTGTATCTGAAGGTTTTGTTTTGCATCTTTCTGTAAAAATAGTCATGAAGTGCTTCATATGTGACTACAGATTGAGACATACATGCTGGGTTCTAAACACAAATGCTCTAGTGACATTACAAAATTTTACAAGTAACTCAGTAAATGCCTAAGGCTTACACAGCGAAGGATGTAGGATAAAGGAAACAACTGTGAGCGCGGTGAGTTTCTCTTCTGAACACTGGTGTGTGTGTAAAGACGTGCACCAACTACTGCGATTTTCAAAGTATGGCTACAAAACAAAGCTAAGAGCTGGTCAGCTGAATGCTTGCAACAGAATCTCAGTTACAACTGAACAAAACTCTTCTGAGTCTTTGTTAATCTATGTTATTTCTTGTTATGATTAATCATTTTAAACAATTTCCTACAACAGAAATTTCATTTCAGCAACAGATTAAAGCTGGAAATTCCTTGGAAAAGTAATATTGATACAAACAATAATTAAAACCTCCTTCAAGGTCAGGATTGAGACCTGTCAGGGTCACCAGGATTAAGCATATGAACTCAGAAAATGTCAGTACTGAAGAAAAACTGGCAAGGCCAAAAGCCTGTTTTAAAAAAATAAAAATAAAATAACCTTCCTAACTGTCCCTAAGAGGCAGGAGCATGCCCTCAACATTCTATTGGGGGGCTTGGTTAGTCATGAGAATTATGAAATTGCTACTCACCAACAGCAAGCTTTAACACCAAAGACAGCAAGCGGTTATGGTGGGAGGATTCCCTGACTTTTAATCTTTAGTGGTAGGAATTTTCAACAAACAAATAATAGTAATGTTCAGATTTTGTTTTTTCAACTTTGCTTAAACATTAAAACTCTCAACTCTGAGCTCTGTTAAATACGTATTTTACAGGAGAGTCTGTAAAATCTCGAAATCATACTCCATCTGAAACACCATCATCTCCGTGGCTCCTGCCACGATGAAAGCAAGTCTCACTCACCTATGCAGGCATTTCACAGAGCGAATGCACGTGTGTGTCTGTGTGCGTGCGAACGAATCACAAATGATCACGTCTGTCTATTTTGGGGACATTTCCAGGGCTATTCTTAGGAAGGTCTTCCACCTGGCCAGTCAGTGCTCCTCAGCTAACTTCAATGCCTTTGGCTTCTCTCAGTGCAGGGTACAGCCAAAGGGAAGGGAAGGGAAGGGAAGGCAGCTTTTATCCTCCTTATAGCTGGCAATACAGTACAGAGAAATACTACTAAGAATATGAATATAAGTGCACAAGCTTTTTTACCCCTTTTCTAAAACCCACCAGGCAAAGGCGCAGTTCAAACTTGAGTGACTGTAACTAATTTTCCACATTCCCCTGAGACCTAGGAGAAACCCAACATAAATAGGAAGGGTTACGAGGTGACATATCTATGGCGCTTTCACTGAACATACGTGGGAAACATTAAATAAGAAAGTATTTTTAGACAATGTGAGAGTGAACAAATTTTAAAAATCAATTCTTCGCTTATATCTAGTCTACTACTTAAAGATGTCTCTTAACTCCAATTAAAGAGACAATGCGCTCATCACTGATGGAACAAGGAAGCAAAGAACAAACAGCGACCGGAAGGAGCTTTGAACACCATCTTAAATCTTATGATTGATTTTACGAACCATAGTGACTCAAGGCAGAGTAGACCAACACCCCAAATATTCCTCAAGCTTTTAATTTAAAAGTTCCCTTGTTTTGGTAGCTTATTTCATTCTAGAAAGTATTTAAATAATTTTATGAGTCAAGTCTTCAGTACTGACATTTCCTGAGTTCATACTATTAATCCTGGTGACCCTGATACTTCCTTTCTGTCCTATTATTAAAATAAGACAAGGAGAGTTAGGAGAAATGATATATATTTGCCCAGAGGCTAATGGCTTTTTACCTTATTTTACTGTTCTGTTTCTTTGTTTTGATAAAACTACAGTTAAATTCCAAGAATTTCCTGTAAATATAACTCCAAATATACCATCAGTTTTAGTACAGGTAACTCTTGGAGAGTAAGAGATGCTCTGTGAGAAACAGTGATTCCTCAGGTTTGTATTTCCTGGTGTCAGAAGGCACAACACAGAACAGGAGCCAACTTTCTCACTTGTGTGCCTTTGCCATCAGCCAGCCACAGAAAGCTCCGAGTAAATGGTATCATTTCACTGAGCAACTCCCCAGCTCTTCCCAGTCTTTGCTGTGTTTATTATTTCTCTTCTGGAAACAGCATCTGAGGACCTTGCTTTCCAGTGAGGTGGCGGCCATCTATCTGCACAGCCGCCGAAAGCCCACATTTCACTAAGAAAAGTGTGTTTGTGCGTGCATGTACGTATGGGGTTGCAAGTCAGATTACATAAGCAGCAACTGATGGAGCACACATGGGCAGAGAGGAACGACAGCAACATGGGGTGTAGACCAGGCCAGACTGCAGACAACGGCATGCACATGCTTTTGCACAACACACGAACAGGCCAGAGAAAGCTGCAGGCAGCACATGCCAAGATGCCTTCTGTTACTACAGACACTGTAAAACACAGGTCCCAGGTCTAGTATCTGAATCCCATATGAGTGGTTTTGGTCCTCGGGGACTTCTCTTTTGAAAGTGATACCATTTCTTTTCTTCATTCTGCTACAGAGAGTGCAACTCTGACAGAATGTAGTTTAGAAAGAGGAGCCATATGATGAAACGGTTAACTTAAAAACATATACCCAGATAGAAGACAACCTGGGTTCAAATTCTGGCTCTATCTTTTAACAGCTGTGTGGCTACTGATATGCCTTTAGGGCACCACTTCCTGTACAAATGAGTATCAGAATCATCTGCCTCACCAGGCTGTGATGTTCATATATAAGGAACTGAAGACAGCCATGCCTCCTGAGAGCACTCACTAGGTATTCAGTAGTGTTAGTGCTGTGCTGTCTGGACTACACATAAACAACCGGGGTCGACCTCTTAGATCAAGAAACAAGGGCTGGGGTAGTAGCAAAGATGGCAAGAAAAGGTCCTGAGGTGCCCTCTGCTCCTCGGGTGCCCTCTGCTAGCCTTACAAACAGCAGATGGCATGAAGCTGCTGTGGGGTAGCTTGGCCATGAACCTGAGCACAAACACACTTTGCCCACTTCTTCCCCAGTCTACTGCACTACTCACTTGGGAGTGAACTAAAGAGGAAGGAAGAAATCTAGGTTCTTGGAAAGAGTTCCAGTGTCAGACTGGAAATAACAGGTAATCCTCATCTGCCACAGCCAACAGGGCACAGTCCAAGTACACATCCTGGCGTAGCTGTGGCTGCGACAGATTCTGACCAGGGGCCAGGGAACCAAAGTTTTAGACCTGTTTCTAATATCAGTGTTGCTTTGGCCCTTAGTACACACATAGGTACAAAAAGACCTTTTATATCCAATTTGATAATGCTTGTTGACAATTAGGATTTTTTAAAACTAAAATACAACCCACCAGACTTTCTTAACAGAACACACCCACCGAGTCACCTATAAGCTTAAAGCAGAACCATAACTGCAGTTCAGGAAACACAATTACACGACGACAGGGAGCATCTCGTCATTCTTAAAACTGTCTCTGGTCTCCAAAGCGATGATATAAAAATGCTCACTTTCTATTGGTCTAAAATGTCTGACTTGGTAGGTTGAAAAAATGTCGCAGTATTTATTGCAGAAGATCAACTTAACTGATCTTATAGCATTCTAATCTAAAACCCTGAGTAGTAAGATCACGTACTGTTCTCAGTCCCGAGGCAGTGAGCTTTCTAAGGGCTCTTAAAGGGTCCCCAGGCCTGGCAGTGTGCCTTCCATAGCACGGGCACGCATCAAAATCTCCTCTGAGTAAGATGGCAGGTGGCAGCTGCAAGCTCATCAAGAGAAGGGTCTCATCTTTACACAAATGTCAAAATACAAACCTACAAACCTAATAGTGAACTCGAGACTTCAAGTGAAATCTAATTTACTAATACAAACCTCTCAGTATTCCCTTAGTAGTCTCAATGAAAAATGTCCTCTGTAGGCTTGTGTATTTACACAAACGCCCCTACCCCCACCCCCACCTCCACCTCCGGGGCTGATGGCACTGTGGGTGGCCTTGATGGGAAGAGTCACTGTGCTGGGCTTGAGATTTCACAGCCCGATCCCACCCACGTCCAGTTCCATGTCTTTGCTGGTCTGACTTCTCAACTCCTGTCTCTGTCACCAGCTTCTCCACTAGGATAGATTCTCATCCCTCTGGAAATGTAAGCCAAGACGTACTCTTTCTCTAGTAGGTGGCTCTGGCTGTGTGTTACCACAGGAGCAGAACAGTAACTACTCTAAAAATGATTAGCCTTATATTCACTGGGTTGCATAGTATTCTTGTTCAAGTATATGGTGTATTTTGATCATATTCATGCCCCATTTTTCTCCTCTAGTCCTTTCCTAAAATAATCTATTTTCATAATTCCCTGTTTTCATGTCATGTATCATGCATGTCTACAAAAAACCTAGGTTCTATAAATAAGAGAAAATACAAGATATTTGCCTTTTTGGGTCTGGTCTAATTCCTTAGTAAGATGACTTCAATTCTATTTTTTTGCAGTAAGACTTAACTCTGTTAATCCCAGCACTCGGGAGGCAGAAGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACATAGAAAAACCCTGTCTCGAAAAATAAAAAACAGACAACAAAAAAAGACTTAACTTTGTTGTTTATGGTTGAGGCACTGTATACATATATAATATATAAATACATATACTTTAATTATTATATATACATGTATGTAATATATAATTTTTTTTCATTCTTCTCTTGATGGACACCTACGCCATAACGTGGCTGTAGTAGATAATGTTGCAATAAACAAATGTGAGCAAGTGTCTCTGAAGTGTGTTGACTTAGAGCCTTTAGACAGATAGAAGGAAACATCTCACCCATATGACGGTTGTAGTTCTTGTTTGAGGACCCCTATATGGACTCCCATAGTGGCTGTTCTAGCTTATAGCCCACTTACTGCCTGTGTAGAAAAGATGTCTCCATGCTCATCCTTGCCAGCATTTGTTATATATTTTAATAATAGCTATTCTAACAGGGACAAGATAGGATCTCAATGTAATTTTAGTTTGTATGTAAACTCATATTAATTATTTTTGTTTCTTCTTCACTCACTGCTTCCTAAAAG
Seq C2 exon
ACGCTGTGGTAGAATTTCATTTCAAAATGAAGGCTTTTGTTTGGACCCTAAGTGTACTACTCTTCCTACTGGGCAGTGGTCATTGCAAAGGAGGACAACTCAAAATAAAAAAAATAACCCAAAGGAGATATCCCCGTGCTACTGATGGGAAAGAGGAAGCAAAGAAATGTTCATATACATTCTTGGTACCTGAACAAAAAATAACAGGGCCAATCTGTGTCAACACCAAAGGTCAGGATGCAGGCACTATTAAGGACATGATCACCAGGATGGACCTGGAGAACCTCAAGGATGTGCTGTCTAGGCAGAAGCGGGAGATAGATGTCCTGCAGCTGGTGGTAGATGTGGACGGGAACATTGTAAACGAGGTGAAGCTGCTGAGAAAGGAAAGCCGGAACATGAACTCCAGAGTCACGCAGCTCTACATGCAGCTACTACATGAGATCATCCGTAAAAGAGACAATTCACTCGAACTTTCCCAGCTGGAAAACAAAATCCTCAATGTCACCACAGAAATGCTGAAGATGGCAACAAGGTACAGGGAGCTAGAGGTGAAGTATGCGTCCTTGACGGATCTTGTCAATAACCAGTCTGTGACGATCACTGTATTGGAAGAGCAGTGCCTGAGGATGTTTTCCCGACAAGACCCCCACGCGTCTCCCCCTCTTGTCCAGGTGGTACCGCGACACAGTCCTAACAGCCACCAGTACACCCCTGGTCTGCTGGGAGGCAATGAGATACAGAGGGACCCAGGTTACCCCAGAGACGTAATGCCACCACCTGATCTGCCAACAGCTCCCACGAAAAGCCCTTTCAAGATTCCAGCAGTGACTTTCATCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033544-Angptl1:NM_028333:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.201
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0014213=Fer4_NifH=WD(100=35.2),PF101464=zf-C4H2=WD(100=60.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: