RnoINT0017313 @ rn6
Intron Retention
Gene
ENSRNOG00000004712 | Angptl1
Description
angiopoietin-like 1 [Source:RGD Symbol;Acc:1598128]
Coordinates
chr13:74456487-74463031:+
Coord C1 exon
chr13:74456487-74456776
Coord A exon
chr13:74456777-74462015
Coord C2 exon
chr13:74462016-74463031
Length
5239 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TTACTGCTTCACATCAAAAGACG
3' ss Score
1.56
Exon sequences
Seq C1 exon
GTGGACAGTCTGTCGGCTGCAGCGGGTCACTGCCTTTCCCCACGCAGCAGACAGCACAGGCACAATGCCTTCTCGGCTGCATTAGAGAAAGTCCACAGTCACAAATTACATAGGTGGCCCAACAATTCAGTCAATCGGTGCTGCAAAGAGACGTTCCTTACTGCCTGGATTCACCGGTCAGAACAAAAATGCAGTTACCACTGAAGTCAGAGACGAACAAACTTCCACACTGATCTCAGAGAGCTCGGCAAGGACGCAAGCTCACGGACACGCTTTTTTCAACACCAAAG
Seq A exon
GTATTTTAATATTTCCCTTAGATTTATTCAAAATTCTATGTCAAATGCATCATTGTTCTTCGTACTAGAAAGTATGAGAGTTCCCAGGGAACTTTAGAAGATGTTGATTTGTATCTGAAGGTTTTGTTTTGCATCCTTCTGTAAAAATAGCCATGAAGTGATTCATGATGGTTACCGTGTTATTTGAGGTTCAAGCTAGTATGTGACTATAAATTGAGACATTCATGCTGGGTTCTAAAAACAAATGCTTTAGTGACATTAAAGTTTTACAAGTAACTCATTAAAAACTACCTAAGGCTCATACGGTGTGAGGATGTAGGATAAAGAACAACTGTGAGCTCGGTGAGTTTCTCTTCTGAATGATGGTGTGTGTGGAAAGACGTACACATCTACTGCGATTTTCAAAGTATGGCAACAAAACAAAGCTAAGAGCTGCTCAGCTGAACGCTTGCAACAAAATCTCAGTTACAACCCAACAAAACTCTTCTGAGACTCTAAGTTAATCTGTGGTATCCCATGTTAGGGTTAATCATTTTAAAGAGTTTCCTACAGCAGAAATTTTATTTTGGCAACAGATTAAAACTGGCAATTACCTGGAAAAATAATACTGACACAAACAATATTAAGATCTCCTTCAAGGTCAGGATTGAGAAGTATCAGGGTCACCAGGATTAACCATATGAATTCAGAAAATGTCAGTATTGAAGAAAAACTGGCAAGGCCAAAAGCCTGTTTTAAAATAACTGCCCCTTAGAGGAAGGAGCAAGCCCTCAACACTCTACAGGGCCGGCTCTGCTGATATGAGGATTATGAAATTACTACTCACCAACAGGAAGCTTTAACACAACACAGCAAGCCTGTTACGATGGGAGGATTCCCTGACTTCTACTCTTTAGTGATAGGAGTTTTCAATACAACAAATAATAGTAATGTTCAAAACTTTGGTTTTTTTAACTTTGGTTAACATTAAAACTCTCAACTATGAGCCCTGTTAAAAACATTTTACAGCAGAGTCTGATAAAATTCCTAGTGATACTCCATTTGAAATACCGTCATCTCTGTTGCTGCTGCCATGAGAGAAGCAGTCTCTCATTCATCCTCAGATCTTCCCGTGCCTTACACAGGCATCTAATAGAGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCGTGTGTGCGTGTGCATGCGTGCATGTTTGTGTGTGCGTGAGTGTAAATCACAAATGATTTGTCCATTTTGGGGACATTTCCCAGGCTATTCTCAGGTCAGTTCCTTACACACAGAGACAATCAGGAAGGTCTTCCCTCTGGCCAGTCAGTGCTTCTCAGCTAACTTCCCTGCCTCTGGCTATCTCAGCGTTTACTCTCCTTACAGCCGGCCACACAGGGGAGAGAAATACTAAGAATAGGAACATAACTACACGCACTTTTTCCTTTTCTACAGGCACCAGGCAAAGGCGCAGTCCAAACTTCAGTGTACTGAAACTAATTTTTAACATTCTCTTGAGAACTAGGAAAAAACTTTAACATAAATAGAAAGGTTTTATGAGGTAACACAGATTTATGGGATCTTTCACTTTTAAAACTGAACATATGTGGGGAATATTAAATAAGAGATTATTTTTAGACAATGTGACAGTAAATAAATTGTAAAACTCAGTTCTTCGCTTGAGGTAGATGTAGTCTACCACTTACAGATGTCTCCTAACTGCAGGTTACGAGACAACGAGATCATCGCCGATGTAACGAAGAAGCACAGAATAAACACTGCAACCATAAGGAGCCCTTAATGTCACCTTAAATCTAACGATCGATTTTACCAACCAGAGTGACTCGAGTCAGAACAGACCAAAACCCCAAATAGTCCTCACGGTTTTAATGTAAAAGTTTCCTTGTCTTGGAAGCTTATTTCATTCTAGAAAGTATTTAGATAATTTTGAGTCAAGTCTTCAGTACTGACATTTTCTGAGTCCATATTGTTAATCCTGGTGACCCTAACACTTCCTTTCTGTCCTTTTATTAAAACGATACAAGGAGAGTTAGGAAAAATAATAAGTACTTGCCCAGAGGATAATGGCTTTAATTTTATTTTACTGTTCTGTTTATTTTAATAAAACTACAGGTAAATTCCTTGTAAATATGACTCCAAACACGCCATCAGTCTTAGTACAGGTAACCCTTGGAGAGTAAAAGATGTTCTGTGATAAACAATGTTTCGTCAGGTTTGCATTTCCTAGAATCAGAAGGCACAGCACAGGACAGAAGCTAACGTTCTCACGTGTGTGCCTTTGCCACCAGTCAGCAAAGAAAGCTCTGAGTAAATGATGGCATTTCTCCAAGTAACTCCCCAGCTCTTCCCATTCTTCACTGTTTTCACTACTTCTCTTCTTGAACACTCCACCAACCTGGAAACACCAGCCAAGGGGCCTGGCTTTCTGCACAGGTCGACAGTAGTCTGCACAGCTGCTGAAAGCCCATGTTTTACTAAGAAAAGTACATGTGCGTGTGCATGTGGGATGCTGTAAGGCAGATTACATAAACGCCACCTGATCGAGCACACATGGGCAGCAACAAGGGGTGTAGAACAGGCTAGACTATGTAAGAACGGCCTGCACATGCTTTTGCATAACAAGTGAACAGGCCAGGGAAAGCTACAAGCAGCCCATGCCAGGGTGCCTTCTGTTATGAGTGTTTCTGGTCCTCTGGGATGTTTCCTTTGAAAGTGATGCTGCCTCTTTCTTCAGCCTGCTACAGAGAATGCACCCCCAACAGAAAGTAGTCTAGAAAGCAGAGCCATATGATGAAAGTTAATTAAAAACATGAACCCAGCCAGAAGATGACCTGGGTTCAAATTCTGTCTCTACCTTTTAACAGCTGTGTGGTTACTGATCAGACACTTTAGGGCATCACTTCCTGGTTAGATGAGTGTAGAATCACCTGCCTCACCTAGCTGTGGTGAGGATGATGCAGTATGTTCACGTAAAGGACTGAGGACAATGACGCCTCAGAGCACTCAGCAGGCACTCAGTAGTGCTAGTCTGTGCTGTCAGAACCACACAAACACAACTTGGGGTCGACCTCTTGGATCAAGAAACAAAGGCTGAGGTAAAAAGGGCACTCAGAGAAGCTCCTTGGGTACACACCCTTGCTAGCCTTACAAACAGCAGACAGCATGAGCTGCTCTGGGGAAGCTTGCCCGTGAACCTGAGTAGGCCCAGGAACACTGCCCATGTCTACTTCCCCAGTCTACTGCACTATTCACCTGGGAGTGGACTAGAGAGAAAGAAGGAAATCTAGGTTCTTGAAAAGAGTTCCAGTGCCGGACTCTAAAGAATAGGGACTTCTCACCTGCCCCAGCCCACAGGGCACAGTCCAAGCACACATTCTGGCGTAACTGTTGCTGCTACAGCTACTAACTGGGGCCAGGAAACCAAAGTTGTAGACCTGTTTCTAATATTAGTGTGGCTTTGGCCCTTAGTGCACACATGGGTACAAAAAGGCCCTTTATATCCAATTTGGTAATGCTTGTTGAAAATTACGGTTTTGTCTTTTTTCACTAAAATACAACCCACTAGATTTTCTTAACAGAATACACCAGCTGAGTCAGTCACCTATAACTTAGAGCATAAACATGACTGCAGTTTAGGATACACAATTACCCACAATGACTGTGAACATCCGTCATTCTTAAACTTGTCTCTAGTCTCAAAAGCAGATGATATAAAAACTGTTCCACTTTCTATTGCTCTAAAATGTCTGGCTTGGTAGGTTAAAAAAAAAAATCACAGTATTTATTACAGACGACCAACTTAACTGATCTTACAGTATTCTAATTTAAAACCCTGAGTAGTAAGATCACGTGGAGACTGCAGTAAAAACCCAACAAAACTCTAATATCTGATATACATCACGAGCTATTCTCATAGCCCTGAGACAGTGAGCTTCCTAGTGGGGTCTTAAAGCGCCCATAAGTCTTGCACTGTGCCTTTTACAGCACAGGCACGCGTGCAAATCTCCTGAGAGCCTGGGAACAGAGACTATGTAAGATGGCAGGTGGCAGCTATAAGAGTGTCAAGAGAAGGGTCTAATCTTCAAACAAATGTCAAGATACAAACCTAACAGTGAACTTACAACTTCATGCTAAATCTAATTTACTAATACAAACCTTTTTAGAAAAGTTTCCCCTTAAATGCTATAGTGGTCTCAATGAGAAATGTCCTCTATAGGTGTGTATTTAAACAGGTGGCCCCAGTTGGTGGCACTGTTGGTGGCCTTGCTGGAGGAAGAATCACTGGTGCTGGGCTGGAGATTTCAGAGCTCCATTTCATGTCTAGTTCCGTGTCTTTGCTGGTCTGACGTCTCAATTCCTGTCACTGCTGCCAGACCTCTCCACCAGAACAGATTCTTACCCCTCTAAAAGTGTAAACCAAGACATACTCTTTCTCCTTAAGTGGCTTCTGGCTATATGTTACCATAACTAACAGGTGGTTTTTTTTATATTACTGCTCTAAAAATTATTAGCTTTATATTCACTGGGTTTTATTGTATTTTTGTTGAAGTATATCATGTATCTTGACCACGTTCATGCTCTATTTTCTACTCTAGTCTTTTCCCCAAATAATCTATTTTCATAATTCCCTGTTTTCATGTCATGTGTCATGTATGTCTACAGAAAACCTAGTTTCCATGTATAAGAGAGAAAATACAAGACATTTGCTTTTTTGGGTCTGGTCTATTTCCTTAGTAAGATGACTTTGATTCTGTTTTTCTGCAAGATTCTGTTGTTTCTGGCTGAGGCACTGTATATATACAGAATATATAAAATGTATATATTACATATATACGTACGACATTTTTTTCATTCTTCTCTTGATGGACACCTAGGCTATTACTTGGCCGTGGTCAACAGTGCTGCAGTAAACACGTGTAAGCACGTGTCTCTGAAGTGTGCCGACTCAGGGCCTTTTAGATAGATAGAGGAGAACAGTTCAGCCGCACGATGGTTCTACTTCCTGTTTGAGCCACACGGACCCCCGTAGTGACTGTTCTAGTTTATAGTCCCGCTGCCTGTGTATAGAATGTGTCTCCACACTCATCCTGGCCAGCATCTGCCATATTTTTTAGTAATAGCTATTCTAATAGGGATGAGATAGAAACTCAATGTAATTTTGGTTTGTATGTAAACTCGTATTAATTCTTTTTGTTTTCCCTTCACTTACTGCTTCACATCAAAAG
Seq C2 exon
ACGCTGTGGTAGAATTCACTTCAAAATGAAGACTTTTGTCTGGATCCTAAGTGTGGTACTCTTCCTACTGGGCATTGGTCACTGCAAAGGAGGACAATTCAAAATAAAAAAAACAACCCAAAGGAGATATCCCCGTGCTACAGATGGTAAAGAGGAAACAAAGAAATGTTCATATACATTCTTGGTACCCGAACAGAAAATAACAGGGCCAATCTGTGTCAACACCAAAGGTCAGGATGCGGGCACTATTAAAGACATGATCACCAGGATGGACCTTGAGAACCTGAAGGATGTGCTCTCTAGGCAGAAACGAGAGATAGATGTCCTGCAGCTGGTGGTGGATGTGGATGGGAACATTGTGAATGAGGTGAAGCTGCTGAGAAAGGAGAGCCGGAACATGAACTCCAGAGTCACTCAACTCTATATGCAGCTACTACATGAGATCATCCGTAAGAGAGATAACTCACTCGAACTTTCCCAGCTGGAAAACAAAATCCTCAATGTCACCACAGAAATGCTCAAGATGGCAACACGATACCGGGAGCTAGAGGTGAAATATGCTTCCTTGACTGATCTTGTCAATAACCAGTCTGTGATGATCACTGTACTGGAAGAGCAGTGCTTGAGGCTATTTTCCCGACAAGACCCCCACGTGTCTCCCCCTCTTGTCCAGGTGGTACCACGACACATTCCTAACAGCCACCAGGACACCCCTGGTCTGCTGGCAGGCAATGAGATACAGAGGGATCCAGGTTATCCCAGAGACTTAATGCCACCACCTGATCTGGCAACAGCTCCCACAAAAAGCCCTTTCAAGATTCCAGCAGTGACTTTCATCAATGAAGGTGAGTTACCGTTTCCTGGTCAATGGAAGAACGAAGCTGCCATGCTGTACAATCCATGCGACAATACTCTTAGAACGTCCTAGTTCTTATGTGCTGATGTCACGCTCAACCAAAACATCACTTTCTAAAGTAATATTAGGATTTGATATAAAAGATCTCTTTTCTCCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004712:ENSRNOT00000065801:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.190
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]