HsaINT1003631 @ hg38
Intron Retention
Gene
ENSG00000116194 | ANGPTL1
Description
angiopoietin like 1 [Source:HGNC Symbol;Acc:HGNC:489]
Coordinates
chr1:178869114-178871052:-
Coord C1 exon
chr1:178870741-178871052
Coord A exon
chr1:178869224-178870740
Coord C2 exon
chr1:178869114-178869223
Length
1517 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TCGTTTCTTCTCTCTACTAGCTG
3' ss Score
7.98
Exon sequences
Seq C1 exon
GCAGCTGGTTACTGCATTTCTCCATGTGGCAGACAGAGCAAAGCCACAACGCTTTCTCTGCTGGATTAAAGACGGCCCACAGACCAGAACTTCCACTATACTACTTAAAATTACATAGGTGGCTTGTCAAATTCAATTGATTAGTATTGTAAAAGGAAAAAGAAGTTCCTTCTTACAGCTTGGATTCAACGGTCCAAAACAAAAATGCAGCTGCCATTAAAGTCACAGATGAACAAACTTCTACACTGATTTTTAAAATCAAGAATAAGGGCAGCAAGTTTCTGGATTCACTGAATCAACAGACACAAAAAG
Seq A exon
GTATTTAATATTTCTTTTATTTAAAAATATTATGTATAGCAAATGCATAACTATTTTATATTTGTAGTAGAAATTTCAGAATCTTTTACTAAACAAAGACCTTTGGAATATACTACAGTTTATCTCATCTGAAAAAGGTTTTATCTTGCAACTTGACATAAAAACATTAAGTACTGTGCAATGGTTAATGCATTATTTGAGGTTCAATTTAATGATGTTTAGTGTATATGATTACAGACTGATACATGCATGCCATGCTGGGTTTCTGAAAACAAGTGCTTTAGTGACAGTAGAAAGAAATTTTAACAAGTAACAGATTAAATGTATAAGGCTTACAGCACAATGATTAAAAACAAAGGAATACAAACTAAATAGTCGTGAACACAATTAGTTTCTCTTCCTGCAGCCACAGTGTGTGTGCTGAAGATATACATAAACTGTTGGATTTCTCAGTGTAGTCATAAAACAAAGCTAAGATACAAAAATAGTTGAAAGTCTTTGCAACAAAATCTCAATTACAGTATAACCAAATATTAAGCAGAAATTCTTGTACAGATTTAAGATTAATCTATGGCATTTCTTGTTCCAACTCAAAATTTTAAATAGCTTTCCAGGCTTACATGTAATAGTAATTTAATTTGGATGACAGAAATTAAACTTGCTACAAATGGAATCACTTGGAAAAGCTAAGTTATTGATATACACACAAAAGCATTATGTAAGTGGTATTAACAATAGAAAATAAGAACCCAGAAGATGTAATTAAATTCATGACTAAAAGGCCAAAAATATGTAATATTTTAGGTAGAAATAATTTTGTTAAGCACACATAAGAGGTTTCCTTCAATATTCTATCTGGGAGCTTTTTTTACATGCATTATAAAAACTATTAAAGATAAAATTACTCGTTACCAATAGTATGCCTTAAACCAAAGACACTTAAGTTTGTTAGATTTGGGGCTCCTTTAGCCTTGTAAAAATTAAAGATATTAATGGTTAAGAATCTTGAACAAGCAAATAATGGTAAAGCTAAAATTTTTTCCAACTTTGCTTTTGTGTCCTTTCCTTAAAGATTTAAAACTGTAAATGCTGGCAGGATTTCTGTTAAACACATATTTTACAAGAAATTCTAACAAAATTTCCAAGCAACAGTGGATCTGAAATACTGTCATCTCTCTTTTTTGTTGTTGCATGCTATGGGAAGTGCAGGACTTCATTAAGCCTCAGTTCTTACTGACGCTGTCTTAAGGCAGGCATTTAATCTGAACCCCAAATTACACAGATAACTATTTATCCTTTTCTTAAATATATCCAGGGGATTAGATTGTTCTCAAGTCTCTTCCCAGAACATATTTCACAATCTAGAAATTCTTTATCTAACATATCCTGAATGCTTCATAAATTTAACTTCATTGCCTCATGCTGTTTTCAGTGCATGACACAGCCAGTTAAATGCCTCTGTGAGTTTACCATCTGAAAGGAGGCAAATCCTGACTTTCGTTTCTTCTCTCTACTAG
Seq C2 exon
CTGGCAATATAGCAACTATGAAGAGAAAAGCTACTAATAAAATTAACCCAACGCATAGAAGACTTTTTTTTCTCTTCTAAAAACAACTAAGTAAAGACTTAAATTTAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116194:ENST00000234816:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTGGCAGACAGAGCAAA
R:
AAGTCTTCTATGCGTTGGGTT
Band lengths:
356-1873
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains