HsaEX0052108 @ hg38
Exon Skipping
Gene
ENSG00000116191 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:HGNC:30279]
Coordinates
chr1:178833424-178879788:+
Coord C1 exon
chr1:178833424-178833550
Coord A exon
chr1:178877498-178877635
Coord C2 exon
chr1:178878902-178879788
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTATCTAATTGTATTTCAGGTA
3' ss Score
10.48
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAATTAGAATATGTAATGAGTAAAGAAGATAACTACAAAAGACTCAGAGACTATATAAGTAGCTTAAAGATGACACCTTGCATTCCCTATTTAG
Seq A exon
GTATCTATTTGTCAGATTTAACATACATCGATTCAGCATACCCATCAACTGGCAGCATTCTAGAAAATGAGCAAAGATCAAATTTAATGAATAATATCCTTCGAATAATTTCTGATTTACAGCAGTCTTGTGAATATG
Seq C2 exon
ATATTCCCATGTTGCCTCATGTCCAAAAATATCTCAACTCTGTTCAGTATATAGAAGAACTACAAAAATTTGTGGAAGACGATAATTACAAGTAGGTTGGATCTTCAAAAGTGGTTTGTATAACTTTGTCCTGTCCTCCACCTTTCTATCCCTATGTATTTAAACATCTAAATCCTACATGGTATCATACAAAGGACTAATCCAGTGGTTTACAGCAGTAAAGGTACTAACATGTATTACTTCTTAATCACTTGTTATGATTGAGCCAATATACAAATACCTCATCTGTTCTTTTTAATATTTTATCTCTGTTTGTAGAGAGCTAACGTTTGATAGTTCTAATTTAAATTTCTTCCTTTCCCCCATATTCAATCATTGAATCCTTATAGAATTTGTCTTTTAATAGACAGAAAAATTAATGAAACTTTTTAAAATAGAAAAATTACTCTTCTTTAATGCTAAGTATTGACACATCGTTGTTTGTTTTTCATTGTTTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116191_MULTIEX1-8/10=6-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(18.0=100)
A:
PF0061714=RasGEF=PD(18.1=74.5)
C2:
PF0061714=RasGEF=PD(12.4=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGACACCTTGCATTCCCT
R:
ACCTTTACTGCTGTAAACCACTGG
Band lengths:
252-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development