MmuEX6028492 @ mm9
Exon Skipping
Gene
ENSMUSG00000026594 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:MGI Symbol;Acc:MGI:1925505]
Coordinates
chr1:158762796-158799698:-
Coord C1 exon
chr1:158799572-158799698
Coord A exon
chr1:158763026-158763163
Coord C2 exon
chr1:158762796-158762886
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTGCCTGGTTTCTGTTGCAGGCA
3' ss Score
10.22
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAACTAGAATATGTAATGAGTAAAGAAGATAACTACAAAAGACTCAGAGACTATATAAGCAGCTTAAAGATGACTCCTTGCATTCCCTATTTAG
Seq A exon
GCATCTATTTGTCTGACTTGACCTACATTGACTCCGCGTACCCATCCACCGGCAGCATTCTAGAAAATGAGCAAAGATCAAATCTGATGAACAACATTCTTCGAATAATTTCTGATTTGCAGCAGTCCTGTGAATATG
Seq C2 exon
ATATTCCCATATTGCCTCATGTCCAAAAATACCTGAACTCTGTTCAGTATATAGAAGAACTACAAAAGTTTGTGGAAGACGATAATTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026594-'17-17,'17-16,21-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(21.5=100)
A:
PF0061714=RasGEF=PD(19.0=78.7)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAAAGACAAAACTACCTTTGA
R:
TTGTAATTATCGTCTTCCACAAACT
Band lengths:
210-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: